Oncorhynchus nerka (sockeye salmon): 115144839
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Entry
115144839 CDS
T07952
Name
(RefSeq) transcription intermediary factor 1-alpha-like isoform X1
KO
K08881
tripartite motif-containing protein 24 [EC:
2.3.2.27
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
one01001
]
115144839
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
one04121
]
115144839
Enzymes [BR:
one01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
115144839
Protein kinases [BR:
one01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
115144839
Ubiquitin system [BR:
one04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
115144839
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-B_box
Bromodomain
ANCHR-like_BBOX
PHD
zf-RING_UBOX
PHD-1st_NSD
zf-RING_5
zf-C3HC4
zf-RING_2
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
115144839
NCBI-ProteinID:
XP_029541795
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All DBs
Position
LG17:6744258..6755928
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AA seq
997 aa
AA seq
DB search
MDEGAESDDAVIIVENEAESMPVQENTNACNERTGTLNFLDTCPVCHLNFHSREPKLLPC
LHSFCKKCLPSASRNLAMPDTNSSTKPLNVIRCPVCRQECMEVDVMENFFVRDSVEASSS
TVERTVQLCMSCEDNTETTGFCVDCVEFMCATCVEAHQRVKFTKDHTIRQKGDVSQEYVG
VSTHRPVFCEVHKQEPLKLFCETCDLPTCRDCQLLKHKDHNYQFLEDAYKNHKHYMEDMN
RQLLEKKKIIEDVSNSINNGLLQVDENRISVHNEIKKSICSLILEINRKGKILVNQLEGL
TKDHESGLKKQKEDIGYLSRHLDHVINFTKWATARNGGTALLYCKRLILFQIGNLLRAKC
NTSFVPQSTVRFQCRSGFWSSNVDLGSLVVENVPGPQLGSFQGIPHQLPHPGQGPSGSPN
SLPPGLSQPRLAPHNHNTLAQLQMQVEKLAQQPHWQPQTPPWAWYQSMRLQRPPPGPLQG
GSPSQSLPPMPQQGRRFIAPPAIHLSPTSTLPSPGYPPQAVQSLRGLVSSPSSYALKHMD
IFNPMPHFSHNAPLSSNGSLSSPHLRQQQMESAYHNKHPGGPVQIIRPTFPQTLPASLPY
RTAQGHHHAGLTAISCEEKPGTVSWKPLETQQKAYGAGGSAAKRRRRASPGPIIIIKDEP
EDDISCVQGNLRANLPDSSTGVQAQTCRQDGGEPQVQISRQSTEEKAQAPPQPPGPSGDL
SQAPQQSHSLGAEQQLGSQGPAPEEDPNEDWCAVCQNGGELLLCCDKCPKVFHLSCHIPT
LFRLPSGEWICSFCRDLSVPEVVYDCDISRLEPRTVKEEPDSEGGFCPVDKRKCERLLLK
MYCSELSADFQEARSPLILPENQETQKTPMVLSIVKSKLESRQSPCYQTPSEFVSDIRLI
FRNCAAFNEADTEVATAGRNLERFFEEQLKFLYPERIFPKVKSEVISSVTPPVSPPPPTT
PDEESSQHAKHQRRCSETQELCTPAQLSSPKGEEEAV
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaggtgcagagtccgatgatgctgtcattattgtggagaacgaagcagagagc
atgccagttcaggagaacacgaacgcctgcaacgagcggacaggcaccttgaattttctg
gacacttgtcccgtgtgtcatttaaactttcacagtcgagaaccaaaacttctgccatgt
ctccactctttttgtaagaagtgtttgccgtcggcttccaggaatttggccatgccagac
actaacagctcgacgaaaccactgaatgtgattcgctgtccggtgtgcagacaggagtgt
atggaggtggacgtgatggagaacttctttgtgagggactcagtggaggcttccagcagc
accgtggagaggactgttcagctatgtatgagttgtgaggacaacacagagactacaggt
ttctgtgtggactgtgtggagttcatgtgtgccacctgcgtggaggcccaccagagggtc
aagttcaccaaagaccacaccatcagacagaagggggatgtatctcaagagtatgtgggt
gtttccactcataggccagtgttctgtgaagtccacaagcaggagcccctgaagctgttc
tgtgaaacctgtgatctaccaacctgtcgagactgtcagctactcaagcacaaggaccac
aattaccagtttctggaggatgcctataagaatcacaaacattacatggaggatatgaat
cgtcaactgctggaaaaaaagaagatcattgaagatgtgtcaaactccataaacaatgga
ctccttcaagttgatgagaaccgcatatcagttcacaatgaaatcaagaagtccatctgt
agtctgatactagagatcaacagaaagggaaagattcttgtcaatcagcttgagggcctg
acaaaggatcatgagagcggtctgaagaagcagaaggaggatattggctatctgtccaga
cacctggatcacgtgatcaacttcacaaaatgggcgacagctaggaacggcggcacagct
ctcctgtactgcaaacgtttgattctgtttcagatcggaaacctcctgcgggctaaatgc
aatacctcgtttgtaccgcagagcactgtgcgtttccagtgtcggtcaggcttctggtct
tcaaatgtcgatctgggctcattagtggtggagaatgtcccaggcccccagctgggcagc
ttccagggcatccctcatcaactcccccatcctgggcagggcccctcaggctcccccaac
agcctgcccccaggcctctcccagccccgcctggccccccacaaccacaacaccctggct
cagctccagatgcaggtggagaaactagcccaacagcctcactggcagccccagacccca
ccctgggcctggtaccagagcatgcggctccagagaccccctccagggcccctccagggt
ggctctccctcccagagtctcccccccatgccccagcagggccggaggttcattgccccc
cctgcaatccatctcagtcccaccagcaccctgccaagtcctggatatcctccccaggct
gtccaatcactgagaggcctcgtgagcagtcccagcagctatgcactcaaacacatggac
atattcaacccaatgcctcacttctcccacaatgcaccactgtctagcaacggcagcctc
agttctcctcacttgcgacagcaacagatggagtctgcatatcacaacaagcaccctgga
ggccctgtccagataataagacccaccttccctcagaccctaccagcttccctcccatac
agaactgcacaaggacaccatcatgcaggactaactgctatatcctgtgaagagaaacca
gggactgtttcctggaaacctctggagacacagcagaaggcgtatggagctgggggatca
gctgccaagaggagacgaagggcatcgcctggacccatcatcatcatcaaagacgagcca
gaggacgacatcagctgtgtacagggtaacctgagagccaacctcccagacagtagcacg
ggggtccaggcccaaacctgtcggcaagatggaggggaaccacaagtccagatttctcgt
cagagcacagaggaaaaggcccaagccccaccacagcctccagggccttcaggggacctg
agtcaagccccacagcagagccactctctgggggcagagcagcagctaggcagtcagggc
ccagctccagaagaggaccctaatgaggattggtgtgctgtgtgtcagaatggaggagag
ctgctgctgtgttgtgacaagtgtcccaaagtcttccacctctcttgccacatccccacc
ctcttcagattacccagtggggagtggatctgctcattctgccgtgacctgtcagtgcct
gaggtggtgtatgactgtgacatcagcagattagagcccagaacagtgaaggaggaacca
gactctgagggaggattctgccctgtggacaaacggaaatgtgagcgactgttgctgaag
atgtactgcagtgagctcagtgctgacttccaggaggctagatcccccttgatattgcca
gagaaccaggagacccaaaagacgccgatggttctgtccattgtgaagagcaagctggaa
tccaggcagagcccctgctaccagacaccttctgagtttgtatcagacatccgactcatc
ttcaggaactgtgcagcattcaatgaggctgacactgaggttgccactgcagggagaaac
ctggagaggttctttgaggagcagttgaagttcctctaccctgaaaggatttttccaaag
gtcaagtctgaggtcatcagttctgtgacccctcccgtctctcctccccctcccacaacc
cctgatgaggagagctcccagcatgcaaagcatcagcgcaggtgctctgagacccaggag
ttgtgtactcctgctcagctaagctcaccaaagggagaggaagaggccgtataa
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