Oncorhynchus nerka (sockeye salmon): 115144871
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Entry
115144871 CDS
T07952
Name
(RefSeq) DNA-directed RNA polymerase, mitochondrial-like isoform X1
KO
K10908
DNA-directed RNA polymerase, mitochondrial [EC:
2.7.7.6
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03029 Mitochondrial biogenesis [BR:
one03029
]
115144871
Enzymes [BR:
one01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
115144871
Mitochondrial biogenesis [BR:
one03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
Mitochondrial RNA polymerase
115144871
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol
RPOL_N
PPR_3
PPR_2
FTA4
Motif
Other DBs
NCBI-GeneID:
115144871
NCBI-ProteinID:
XP_029541829
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All DBs
Position
LG17:complement(8595618..8634745)
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AA seq
1340 aa
AA seq
DB search
MSLLRLCALPKCLSGLILLERSVRRVSNAGHCHYFLTLRNNVERRISDPPWTSQRRHFSA
LIPKKEDGKKRVWEQSRLLDVLEARIQQLQSDIVLDVQHAKVQFVNASKLGRGASSGKSH
KNVCGGRTELPKVGQTISKGGGQTGKGGGKDASASKSRWMEKLIQEKTTKTKKLNLKLGI
EDKPVKSRKGKLMLPGTAQKNILTKAGKKTALTSKKSKTLKNQEPNAIQADTIAGPPVAA
ETVPIRKAKGKGKASKEPAPEFSEARDQELAELERKTEAKAQELAEVEKLERKLNQWAMS
ASPELVQDNSEARMYEGVQLSVHCYLEACVFCGDIDRAQRLLLTHHRMISRRNLLNIGLY
NIMMRVWAKKGSLNQIGRMFILVEEAGLKPNLTSYCAALECMGRTPNCSPKVINRVLRQM
KEDGLCVEELFRLCVFRQDERDMVLRAIHTVEPDFQPSINTVLHTCSSPLVKDFYTERAD
AKYPKLAFSLEELRERFSRQLSMEQASTITIHSVEAMKPVTPHMAKMRTLLAEQWMVWHK
ALVGALRESNMILASITPKAVRLSLYPYLCLMDQKDYVDIMIQSLSNLPPSGESLHILAK
ELGNRVHNKFCIRMKSHNQMVDKLSHIYNEYAELLAKDSKDFDVLPRERWWKLEAEHSSG
PSLLGDNTQWPHTVVVELGTYLVDLMVKHMKVNSDILNPANDRKFIPVLYHMYTFRSNKQ
VGFIKPHPILTQMQQDAMETTLTFDSYVMPMLCPPVPWTSAKFGAYLLTPTKMMRTVVGA
NQHEILLEKCQEADLHAVLDSLNQLGNAAWRINQPLLDIIISIFNDKGNEKLDIPPPNSE
APKILRYSQQDLATYSSAEKAHLKREVVKAKKKCSEMHSLRMDALYKLSIANHMRDEVFW
FPHNMDFRGRTYPCPPYFNHLGSDVTRAILVFAEGKPLGPGGLKWLKIHLVNLTGLKKRS
SLAGRLEYANTIMDDILDSADNPLNGKKWWQNADEPWQALACCMEIANAVRSPDPTHFIS
HFPVHQDGSCNGLQHYAALGRDVIGATSVNLIPCEVPQDVYSGVAQQVEEFRARDSEKGL
KIAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLKEVDDFPKEYVWDASHYLVQQ
VFSSLKEMFTGTREIQDWLTESARLISKSGNTVEWVTPLGLPIIQPYHRTRTQMLKGTIQ
DLSLQITHDSKQKPDTVKQKNAFPPNFIHSLDSTHMMLTALYCYSAGLTFVSVHDCFWTH
ALTVDTMNKVCREQFVALHSQPILQELSNFLLQKYCSGQSSEVKNNKFMEYRRMLLLLAK
VPQTGDFDLQQVKESTYFFS
NT seq
4023 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctattgagactgtgtgccttaccgaagtgtctgagtggtctaatattgttggaa
agaagtgttcgtcgtgtgtcaaatgctggccattgccactactttcttacactccggaat
aacgttgaaagacgaatatcagatccaccatggacatcacaacgaagacatttctcagct
ctgatcccaaagaaagaggatgggaaaaaacgagtatgggaacaatctcggctattagat
gtgcttgaggccagaatccagcaactccaatctgacattgttttagatgtccaacatgca
aaggtacaatttgtcaatgcttccaagttggggagaggggcttcttcagggaagagtcac
aaaaatgtttgtggggggaggactgagttgcccaaggtgggacagactattagtaaggga
gggggacagactggtaagggagggggaaaagatgcttcagcctccaaatcccgctggatg
gagaaactgattcaggagaagacgactaaaacaaagaaactgaacctgaagctaggcata
gaagataaacctgtgaaaagcagaaaaggaaaactgatgctgccaggtaccgcacaaaaa
aacatattgacaaaagctggaaaaaagactgcattgacctctaaaaagagcaagactctg
aaaaaccaagagccaaatgctatccaagccgacactattgcaggtcccccggttgctgct
gaaactgtgcctattagaaaagccaaaggaaaggggaaagcctcaaaggagccggctcct
gagttttctgaggccagggaccaggagctggctgagctggagaggaagactgaggccaag
gcccaggagctggctgaggtggagaagttggagaggaagcttaaccagtgggctatgtct
gccagcccggagctcgtgcaggataacagcgaggccaggatgtacgagggcgtccagctt
agtgtgcattgctacctggaggcctgtgtgttctgtggtgacattgaccgagcccagcgc
ctcctgctcactcaccatcgcatgatcagccgacgcaacctgctcaacataggactctac
aacatcatgatgagggtctgggccaagaagggctctttgaaccagattggacgtatgttc
attctggtagaagaggcaggtctgaagcctaacctcacctcctactgtgctgcactggag
tgcatgggcagaacccctaactgttctccaaaggtcatcaacagggtcctgcgtcagatg
aaagaggatggcctgtgtgtggaagagctgtttagactctgtgtgttcaggcaggatgag
agggacatggtgctgagggccatccacaccgtggaaccagactttcaacccagcatcaac
actgtcctgcacacttgctcctcacctctggtcaaagacttctacacagagagggcagat
gctaagtaccccaagttggccttcagcctggaggagctgcgggagaggttcagccgtcag
ctgagcatggaacaggccagcaccatcaccattcactctgtggaggccatgaagcctgtt
accccacacatggccaagatgaggactctgctggcggagcagtggatggtgtggcacaaa
gccctggttggggccctgagggagagcaatatgatcctggccagcatcaccccgaaggcc
gtcagactcagcctctacccctacctctgtctgatggaccaaaaggactatgtagacatc
atgatccagagtctgtctaacttgccacccagtggggagtctctccacatcctggccaag
gagctgggaaacagggtccacaacaagttctgcatccgcatgaagagccacaaccagatg
gtggacaagctcagccatatctacaatgaatatgctgagctactagccaaagactctaag
gattttgacgtattgcctagggaacgatggtggaagctggaggcggagcatagctctggt
ccctccctgctgggggacaatacccaatggccccacacggtggtggtggagctgggcacc
tacctggtggacctcatggtcaagcacatgaaggtgaacagcgacatcctcaaccctgcc
aatgacaggaagttcatccctgtcctctaccacatgtacaccttccgcagtaacaaacag
gtcggcttcatcaagccgcaccccatcctgacacagatgcagcaggacgccatggagacc
acgctgacctttgactcctacgtgatgcccatgctgtgcccccccgtgccctggacctcg
gccaagttcggcgcctacctcctcacccccaccaagatgatgcgcacggtggttggcgcc
aaccagcatgagatcctgctggagaagtgccaggaggctgacctgcatgccgtgctcgac
tccctcaaccagctgggcaacgcggcctggaggatcaaccagcccctgctagacatcatc
atctccatcttcaacgataagggcaatgagaagctggacatcccgccgcccaactccgag
gcccccaagatcctccgctacagccagcaggacttggccacctactcctcagctgagaag
gcccacctgaagagggaggtggtcaaggctaagaagaagtgcagtgagatgcacagcctc
aggatggacgccctctataaactctccatcgccaaccacatgagggacgaggtcttctgg
tttccccacaacatggacttccgcgggcggacgtacccgtgcccgccctacttcaaccac
ctgggcagcgatgtgaccagggccatcctggtgtttgcggaggggaagcccctggggccg
ggcggtctgaaatggctgaagatccacctggtcaacctgacaggcttgaagaaacgcagc
tcgctggccggcaggttggagtacgccaacacaatcatggacgacatcctggactctgca
gacaaccccctcaacggtaagaagtggtggcagaatgcagatgaaccctggcaagccttg
gcctgctgtatggagatagccaacgctgtcagatcacctgaccccacacacttcatctcc
cattttcctgtgcatcaggatggttcatgtaatggtctccagcactacgcagccctgggt
cgggatgtgatcggtgccacctctgtgaacctaattccctgtgaggtgccccaggatgtc
tacagcggggtggcacagcaggtggaggagttccgtgcgcgggactcagagaagggtctg
aagatcgcccaggtgctggagggcttcatcagcaggaaggtggtgaagcagacggtgatg
acggtggtgtacggggtgacgcgctacggaggacgcctccagatagagaagaggctcaag
gaggttgatgacttccccaaggagtacgtatgggacgcctctcactatctggtccaacag
gtgttcagcagtctgaaagagatgttcaccggcaccagagagatccaggactggctgacg
gagagcgccaggctcatctctaaatcgggcaacacggtggagtgggtgacgcccctgggc
ctgcccatcattcaaccctaccaccggaccaggacgcagatgctgaagggtaccatccag
gacctaagtctccagatcacccatgactctaaacagaagccagacacagtgaaacagaag
aatgccttccctcctaacttcatccactctctggactccacacacatgatgctgactgct
ctctactgctacagcgccggcctgacgttcgtctccgtccacgactgcttctggacccac
gcccttacagtcgacacgatgaacaaggtttgccgggagcagtttgtggcactgcacagc
cagcccatccttcaagagctgtccaacttcctactgcagaaatactgctctgggcaatcg
agcgaggtcaaaaacaataagtttatggagtaccggaggatgctgctactactggccaaa
gtgcctcaaacaggcgactttgatctccagcaggtgaaggaatccacttacttcttcagc
taa
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