Oncorhynchus nerka (sockeye salmon): 115144946
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Entry
115144946 CDS
T07952
Name
(RefSeq) neurogenic locus notch homolog protein 2-like
KO
K20994
Notch 2
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
115144946
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
hEGF
EGF_TEN
EGF_CA
EGF_2
Ank_2
Notch
Ank
NOD
NODP
Ank_3
Ank_5
Ank_4
EGF_3
EGF_Teneurin
JAG1-like_EGF2
EGF_MSP1_1
EGF_DL_JAG
Motif
Other DBs
NCBI-GeneID:
115144946
NCBI-ProteinID:
XP_029541964
LinkDB
All DBs
Position
LG17:11845943..11905431
Genome browser
AA seq
2486 aa
AA seq
DB search
MGQLPVFSSGKVLVLVVCCVRLSLALQCLDAVKPCVNNATCATFTNGTGYCRCAAGFLGD
YCHHKDPCHPGYCLNGGNCSVAVSGIPGSPTCSCPLGYTGQHCQTPQNSTCYPNNPCANQ
GVCTLLSLDKYKCQCAHGWTGMRCNREDRCLSGPCANGGTCSSLSGGKFSCTCPPGYWGP
RCLNDTDECAASAPVCQNQGACVNTPGSYRCNCAPGFTGRQCETPYIPCSPSPCLNGGTC
RPTSETSYWCHCLPGFNGTNCENNIDDCPDHQCRNGGTCMDGVNTYNCQCPPEWTGQFCT
EDVDECRLQPNTCQNGGTCSNIQGSYTCVCVNGWSGLDCSENIDDCATAACTNGSTCIDR
VASFLCVCPYGKTGLLCHVNDACISSPCRDGAQCDTNPINGMFNCNCAPGYIGSTCNDDI
NECIIGFPSGPNPCEHGGSCVNTDGSFTCNCARGYGGPRCETDINECASSPCQNDGTCLD
RIGDYSCICMEGFEGTHCEIDINECASSPCLNQGTCLDQVKRYVCQCPLGFSGEMCQIDI
DECSSTPCLNGAKCIDRPNGYECECAEGFSGPLCNENIDDCDPEPCHHGVCRDGIATFSC
DCDPGYTGSICNVQFMECHSNPCQNRGRCIDLVNKYQCNCLPGTSGVNCEFNVDDCASNP
CEYGECQDGINEYKCVCAPGYTGAKCDVDIHECNSSPCMSGGTCVDKVNGFICQCPPGTH
GPLCHSGTNHCAPQPCVHGDCVEQQSGYNCECDSGWVGQHCDQEKDECQSSPCQYSSTCV
DRLNGYSCQCRPGFTGVNCEFNMEECASSPCENHGTCVDGVNTYSCLCDPPYSGKHCEEE
LVPCASHPCERGGVCQPTPDYTFYTCRCPSGWQGPRCAEDVDECRKNPCQNRARCINSQG
SYVCKCRPGYSGLNCQTNIDDCSPHPCLNGGSCVDEVGGFSCDCRQGFDGERCEAEVDEC
ASQPCQNGAVCRDYVNSFVCVCRPGFDGILCEHNIPECTESSCLNNGTCVDDINTFSCRC
RPGFYGTFCEYEQNECDSQPCKHGGTCTDGLGSYRCTCPVGYNGQNCQNFVNLCSQPLCQ
NGGSCSQSETTWLCHCPVGWTGMYCDVPNMSCQDYAARNGIQVELVCKHSGRCVNVGNAH
QCQCLPGYTGSYCNEMVDECLSNPCRNGATCMDYQGTYECMCKAGYQGVNCEYDVDECHS
NPCHHGGTCINLINRFSCACPPGTNGVQCEVNVDDCAPKPGSWELRCLNGGQCVDGVGRY
TCSCPPGFAGEHCEGDVNECLSGPCQSPGSLDCVQLTNDYQCRCRLGYTGRRCESMVDLC
QSKPCHNSGTCSMNMSSVHGYTCICQPGFTGFNCGEVEGYNCAKLRCQNGGHCQESQVGR
PHCRCQPGFSGPRCETVHSCQNRPCLNGGTCMKDPLYQYSCHCPAHFSGRHCENVIFDPS
TSTPASCPYIECEQHSGDKVCDPQCNSHECQWDGGDCSLHWRQPWVNCTAPVPCWELFRN
GRCDPECDNSGCLFDSFECQESAQSYCKYDKYCAAHYANKICDKGCNTEACGWDGLDCSG
DTPAVVADGTLVIVVLLQPEELMGDMRGFLRSLGTLLHTNLRVKMDDQQKPMLYPYYGLE
HDDANGGQPSTMKLRGKRELDKEVVGSKVYLEIDNRKCSERSMDCFSSTELAASFIAAEY
LKSELPYPVVSVNSDPTEPHKPPFLLYLAVGAAVIILLILVLGVLAAKRKRKHGIVWLPD
GFLAKKDDKRREPVGQDDFGMKNFKTQDGGIIDGGQRWMEEEAPPKKTEDKPLLPMGVDG
GVDRREWTLQHHKAADISLTPPQTDLEADCLDVNVKGPDGFTPLMLASLRNGGASDCGLQ
AEEEEESGGDEPGPNAISDLITQGATVMAQTDRTGETALHLAARYARADAAKRLLDAGAD
ANAHDNMGRTPLHAAVAADAQGVFQILIRNRATELDARMNDGTTPLILAARLAVEGMVEE
LVHCHADINAVDDHGKSALHWAAAVNNVEATLVLLKNGANRDMQDNKEQTPLFLAAREGS
FEAAQVLLDHYSNRDITDHLDRLPRDTAQERMHHDIVRLLDQYNLVHSPHNGPNHMGGGH
SSLVCGGNGAGYMGMRPGPQGKKSRRGGAKVGGVGGSTAKELKDMKAKRRKKPTGGEGPA
VGGASGNGTKAAGGLSESSVTMSPVDSLESPHSYIGDAAGASKTTNSPLLGSPSSRPLLP
PVSHMLGQQQSWVGLKHGYGGHMFNLLPQQMGSGQPSMSQHHGQGLLTPMNVTMSREQLP
PIVTFQMMAPGGGQALLKQPQPGQVQSQGQNQGQPQSQQGPTHLHCTQGMLYQMPNMSLQ
HSLSHSLPHPHGLAHGHGMVQDGQSRQQLPPYQAMQSPVDKYPTPPSQHSYATAGSEGTT
PGYPAHPPSEHPYLTPSPESPDPWSSSSPHSNSDWSDVTTSPTPLGNPHALPPLRHTHIP
EQLQPQSQQTQQNPQQPQRGNMQVFA
NT seq
7461 nt
NT seq
+upstream
nt +downstream
nt
atgggccaattacccgttttctcttcgggcaaagtattagtcctcgtcgtctgctgtgtt
cgactttctttggctctccagtgtctggatgctgttaagccgtgtgtcaacaatgctaca
tgtgccaccttcaccaacgggacaggatactgcaggtgtgccgcaggtttcctgggtgat
tactgccatcacaaagacccgtgtcaccctggttactgtctgaatggggggaattgctct
gtggctgtgtcgggcatcccgggcagccctacctgctcctgtcccctgggctacactggg
cagcactgccagaccccccagaactccacctgctaccccaacaacccatgtgccaaccaa
ggagtctgcaccctgctctccctcgacaagtacaagtgccagtgtgcccacggatggaca
ggcatgcgctgtaatcgtgaggacagatgtctgtcaggaccctgtgctaatggaggcacc
tgcagctctctgtctgggggcaagttcagctgtacctgtcctccaggttactggggtcct
cgctgcctcaacgacactgacgagtgtgctgcttctgccccggtgtgtcagaaccaaggg
gcgtgtgtcaacacccccggctcttacaggtgtaactgcgcccccgggttcactggccgc
caatgtgagaccccctacatcccctgctccccctcgccctgcctcaacgggggcacgtgt
cgcccaacctctgagaccagctactggtgccactgcctgccaggcttcaatggtactaac
tgtgagaacaacattgacgactgccccgaccatcaatgccgaaatggagggacctgcatg
gacggtgtcaatacttacaactgccaatgccccccagaatggactggtcagttctgtact
gaggatgtggatgagtgtcgcctgcagcccaacacatgtcagaacggggggacctgcagc
aacatccagggcagctacacctgtgtatgtgtcaacggctggagtggcctggactgctct
gagaacatagatgactgtgctacggctgcctgcaccaatggctccacctgtattgaccgt
gtggcatccttcctttgtgtctgcccttatggaaaaacaggtttgctctgccacgtgaac
gatgcctgcattagtagcccgtgccgggacggggcgcagtgcgacaccaaccccatcaac
ggcatgttcaactgcaactgcgccccaggctacataggaagcacctgcaatgacgacatc
aatgagtgcatcataggcttcccctcaggtccaaatccctgtgagcatggaggatcgtgt
gtgaacacagatggctcgttcacatgtaactgtgcgagaggttatggtgggccgcgctgt
gagacagacatcaatgagtgtgcgtccagcccctgccagaatgacggcacctgtctggac
cgcataggagactacagctgcatctgtatggaaggatttgagggaacacactgtgagatt
gacatcaacgagtgtgccagttctccatgtctgaaccaagggacctgtctggatcaagtg
aaacgctacgtctgccagtgccctctaggattcagtggggagatgtgtcagatcgacatt
gacgagtgttccagcacaccatgtctcaacggggcgaagtgtatcgaccgtcccaacggc
tacgagtgtgaatgtgctgaaggcttctcggggccgttgtgtaatgagaacatagatgac
tgtgacccagagccctgtcaccacggggtttgtcgtgacggcatcgcaaccttctcctgt
gactgtgacccgggctacacaggctctatctgcaacgtccagttcatggagtgccacagc
aacccctgccagaaccgcggacgctgcatcgacctggtcaacaagtaccagtgcaactgt
ctgcctggcacctcgggggtgaactgtgagttcaatgttgacgactgtgccagtaacccc
tgtgaatacggagagtgccaggacgggatcaatgagtacaagtgtgtctgtgctccagga
tacacaggtgcaaaatgtgatgtggacatccatgagtgtaattccagcccgtgtatgagt
gggggtacgtgtgtggacaaggtaaacggcttcatctgccagtgtccccctggcacccac
ggccccttgtgccactctggcaccaaccactgtgccccccagccctgtgtacacggagac
tgtgtagagcagcagagcgggtacaactgtgagtgtgattctggctgggtggggcagcac
tgtgaccaggagaaggatgagtgccagtccagcccctgccagtacagcagcacctgtgtg
gacagactcaacggatactcttgccagtgtcgccccggattcacaggtgtgaactgcgag
ttcaacatggaggagtgtgcatcaagcccgtgtgagaaccatggtacctgtgtggatgga
gtcaacacctacagctgcctgtgtgatcctccatactccggaaaacactgtgaggaggag
ttggttccctgtgcgtctcatccatgtgagaggggaggtgtgtgtcagccaaccccagac
tacaccttttacacctgtcgatgtcccagtggctggcaaggcccccgctgcgctgaggat
gtggatgagtgcaggaagaacccatgtcagaacagggcccgttgcatcaacagccagggc
agctacgtgtgcaagtgtcgaccaggctacagcggtctcaactgccagaccaacatcgat
gactgctccccccacccgtgtctgaacggcggttcctgtgtggacgaagtgggtgggttc
tcctgtgactgccggcaagggtttgatggtgagcggtgtgaggcagaagtggacgagtgt
gccagtcagccgtgtcagaatggagctgtgtgccgggactacgtcaacagctttgtctgt
gtgtgccggccaggtttcgatggaatcctctgtgaacacaacatcccagaatgcactgag
agttcctgtctgaataacgggacctgtgttgatgacatcaacaccttctcgtgtcgttgt
cgtcctggcttctacggcaccttctgtgagtatgagcagaatgagtgtgactctcagccc
tgcaagcacggaggaacctgcactgacggcctgggctcctaccgctgcacctgccctgtg
ggctacaatggacagaactgccagaactttgtgaacctgtgtagccagccactgtgccaa
aatggagggtcttgttcccagtcagagaccacctggttgtgtcactgtcctgtggggtgg
actggcatgtactgtgatgtccccaacatgtcctgtcaggactatgctgctcggaacggt
atccaagtggagttagtgtgcaagcactcgggtcgctgtgtgaacgtgggtaatgcccac
cagtgtcagtgcttgcctggttacacgggcagctactgtaacgagatggtggatgagtgc
ctttccaacccctgccgcaacggggccacctgcatggactaccagggcacatatgagtgt
atgtgcaaggctggctaccagggggtgaactgtgaatatgatgtggatgagtgtcactct
aatccttgtcaccatggaggaacctgcatcaacctcataaaccgcttttcctgcgcctgc
ccacctggcactaatggtgttcagtgtgaggtgaatgtggacgactgtgctcccaagcct
ggctcctgggagcttcgctgtctgaatgggggccagtgtgtggacggggtgggacgctac
acctgctcctgcccccctggcttcgctggggaacactgtgagggggacgtcaacgagtgt
ctctctggtccctgccagtctcctggcagcctggactgtgtacagctgaccaatgactac
cagtgccgctgtcgcttgggctacacaggacgccgctgtgagtccatggtggacctgtgc
cagtcgaagccgtgccataacagtggcacctgctccatgaacatgagctcagtgcatgga
tacacatgcatctgtcaaccaggcttcactggcttcaactgtggagaggtggagggctac
aactgtgccaagctgcgttgccagaacggcgggcactgccaggagtctcaggttggtcgt
ccgcactgccgttgccagccaggcttcagtgggccccgctgcgagaccgtccacagctgc
cagaaccggccctgtctgaacggaggcacctgtatgaaggacccactctaccagtacagc
tgtcactgcccagcccacttctcaggcaggcactgtgagaatgtaatcttcgatccgtct
accagcacccccgcctcctgcccctacatagagtgtgagcagcattctggggataaggtg
tgtgacccgcagtgcaacagccatgagtgccaatgggacggaggggactgttctctacat
tggcgccagccatgggtcaactgcaccgccccggtgccctgctgggagctgttccgcaac
ggccgatgtgaccccgagtgtgacaactctggctgcctcttcgacagcttcgagtgtcag
gagagcgcacagtcttactgcaagtatgataagtactgtgcggctcactatgccaacaag
atctgtgataagggctgtaacacggaggcatgtggctgggacggcctggactgctctgga
gacacccctgctgtggtggctgacggaacgctggtgatcgtagtgttactgcagcctgag
gagctaatgggagacatgagaggcttcctgcgctccctgggaaccctgctgcacaccaac
ctccgtgtcaagatggacgaccagcagaaacctatgttgtatccgtactacggcctcgag
cacgacgacgccaatggaggacagccttctaccatgaagcttagaggcaaacgggagcta
gacaaggaggttgtcgggtctaaggtgtacctggagatcgataaccgtaagtgttctgag
cgctccatggactgcttctccagcacagagctggctgcatccttcatcgctgctgagtac
ttgaaatctgagctgccctaccctgtggtctctgtcaacagtgaccctacggaaccccat
aagccccccttcctgctctacctggctgtgggagcagccgtcatcatcctgctcatcttg
gtgctgggcgtgctggccgccaagaggaaacgcaaacacggcatcgtctggcttcccgat
ggcttcctggccaagaaggatgacaagaggcgagaacccgtgggccaggacgacttcggc
atgaagaacttcaagacccaggatggagggataatagatggaggccagaggtggatggaa
gaggaggctccgccaaagaaaactgaggacaagcccctgctgcccatgggtgtggatgga
ggagtggacagacgggagtggaccctgcagcaccacaaggctgctgacatctctctcact
ccaccacagactgatctggaggcagactgcctggatgtcaatgtcaaaggaccagatggt
ttcacccccctgatgctggcctctctacgaaacggaggtgcatctgattgcggcctgcag
gcggaggaggaggaagagagcgggggagatgagccgggacccaacgccatctcagacctc
atcacccagggtgcaacagtcatggcccagacagaccgcaccggggagacggcactccac
ctggctgctcgctacgcccgggccgacgccgccaagaggctgctggacgctggggcagac
gccaacgctcacgacaacatgggtcgcacccctctccacgctgctgtggcagccgatgcc
cagggagtgttccagatcctgatccgtaaccgggccactgagttggatgccaggatgaat
gatggcaccacacctctgatcctggctgccaggctggctgtggaaggcatggtggaggaa
ttggtacattgccatgctgacatcaacgctgtcgacgaccacggtaaatctgctctgcac
tgggcagctgctgtgaacaatgtggaggccactctggtgctgctgaagaatggagccaac
agagacatgcaggacaacaaggagcagaccccgttgttcctggcagccagagagggtagt
tttgaggcagcccaggttctgctggaccactactctaatagggacatcacagaccacctg
gaccggctgcctcgcgacaccgcacaggagcgcatgcaccatgacatcgtacgtctgctt
gaccagtacaacctggtccacagccctcacaatggccccaaccacatgggcgggggacac
tcttccttggtctgtggaggcaatggcgctggctacatgggcatgcgccccggaccccag
ggcaagaagagcaggcgcggcggggcaaaggttggaggggtgggtgggtctacagcaaaa
gagctgaaagacatgaaggccaagcggagaaagaagccaacgggaggagaagggcctgca
gtgggaggagccagtggcaacggcactaaagctgcaggagggctgtcggagagctcagtc
accatgtcccctgtcgactccctggagtctccacactcatacataggagatgctgccggg
gcctccaaaacgaccaactctcctctcctgggcagcccctcctccaggcccctgctgccc
ccagtcagccacatgctgggccagcagcagagttgggtgggcctgaagcatggctacggt
ggccacatgttcaacctcctcccccagcagatgggcagtggccaacctagcatgtcccag
caccacggccaaggcctgctcacccctatgaatgtcaccatgagccgcgagcagctgcct
cccattgttaccttccagatgatggcgccggggggcgggcaggccctgctgaagcagccc
cagcctgggcaggtgcagtcccagggccaaaaccagggccagccccaatctcagcagggc
cctactcaccttcactgcacccagggcatgttgtaccagatgcccaacatgagcctccag
cacagcctgtctcacagcctccctcacccccacggcctggcccacggccacggcatggtg
caggatggccagtcccgccaacagctccctccctatcaggctatgcagagccccgtggat
aagtacccaacccctccttctcagcacagctacgctacggctggctcggagggcaccacc
ccagggtatccggctcacccgcccagcgagcacccttacctcaccccctcccctgagtcc
cctgacccctggtcctcctcctccccccactccaactcagactggtctgacgtcaccacc
agccccacccccctggggaacccccatgcactgccacctctccgccacacacacattccg
gagcagctgcagccgcagtcccagcagacacaacagaacccccagcagcctcagcgtggc
aacatgcaggtgtttgcatag
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integrated database retrieval system
