Oncorhynchus nerka (sockeye salmon): 115145125
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Entry
115145125 CDS
T07952
Symbol
fip1l1
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115145125 (fip1l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115145125 (fip1l1)
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
115145125 (fip1l1)
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Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
115145125
NCBI-ProteinID:
XP_029542270
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Position
LG17:20955995..20999137
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AA seq
515 aa
AA seq
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MSAEMDKTTDASGGDEEEWLYGDESEEKAEEEAPNSAKTQQTAEEVHENGVVKQDTGQED
EESDSDSEDDDDVCVTIGDIKTGGSSQPFNAFGSTPVNLNIKAAGRTHASVGPKAKGVDL
DALGSVNGIPVLEVDIESFEEKPWRKPGSDLSDYFNYGFNEDTWKTYCEKQRRLRMGYEG
MNHASATKIMVHQGRSAHGDRDGALSCFRSDYSSPSNHYNSGSSSRKQSGTIDVIGGQTG
TISRVEGRRRHNIEGNNIQVLSEPPSDAEPTPTKMPPFFPPNIPPPPFPPPPHNVSSAPP
LIPPPRIPINVPPPGYPPGAPPPSLIPTLDSGRPGGYDGRSAPPYPPFPPGVYPPPPPPG
SAAASWAGVFDSAKAWEYYAQRDNERERHKERDRTRERGHEKEREREREHNPSSQVVNSE
EDRHRHRDYGERGYDRHHHERSSREKEERHREKRHRDKEEGRHKSSSSSSRRRHESEEGD
SHRRHKHKKVKRSREDKEPSQELSADQENQSEPTE
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcagaaatggacaaaacaactgatgcaagcgggggcgatgaagaagaatggtta
tatggagatgagagtgaggagaaggcagaggaagaggcacctaatagtgcaaaaacccag
cagactgctgaagaggtccatgagaatggagtagtgaagcaggatacaggccaggaagat
gaagaaagtgacagtgacagtgaggatgatgatgacgtgtgtgtaaccattggtgatata
aagaccggaggctcgtctcagcctttcaatgcttttggatccacaccagttaatctcaac
attaaggctgcagggagaacacatgcgtcagttggccccaaagccaaaggagtggacctg
gatgcactgggcagtgttaacggaatccctgtgttggaggtcgacattgagtcttttgaa
gaaaagccgtggagaaagcctggttcggacctctcagactactttaactatggctttaac
gaggacacctggaagacctactgtgagaaacagaggagactacgcatggggtatgagggc
atgaaccatgcttcagccactaaaatcatggtccaccagggacgttcagcccatggtgat
agggatggggccctttcctgctttaggtctgactattcctcccccagcaaccactacaat
tcaggctcctccagtagaaagcagagcggcaccattgatgttattgggggacaaactggt
accatcagccgggtagagggacgaagacgtcacaatatagaaggaaataacatccaggtg
ctttctgagcccccctctgatgctgagcctactcccactaagatgccccccttttttcct
cccaacatccccccgcctcctttcccgcctccaccccacaatgtcagctccgcccctcca
ctcattcctccaccacggatccccatcaatgttcctccacctggctaccctcctggcgca
ccacctccttctctgattcccaccttagacagtggacgccctggaggctatgatggtcgc
tcagctccaccgtacccccccttccctccaggtgtgtaccctcctcctcctcccccgggt
agcgcagcagcctcctgggccggggtattcgacagtgccaaggcctgggagtactacgcg
cagcgggacaacgagcgagagcgccacaaggaaagagaccgaaccagagaacgtggacac
gagaaagaaagagaaagggagagagagcacaacccttcctcccaggtcgtcaacagtgag
gaggatcggcaccggcacagggactatggggagagaggatatgaccgccaccaccacgag
agatccagcagagagaaagaagagagacaccgagagaagagacacagagacaaagaggag
gggagacacaagtcctcaagcagtagcagcaggaggagacatgagagtgaggagggggac
agtcatcgaagacacaaacacaagaaggtcaagaggagcagagaggacaaggagcccagc
caggaactctctgctgaccaggagaaccaatcagagcccacagagtga
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