Oncorhynchus nerka (sockeye salmon): 115145127
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Entry
115145127 CDS
T07952
Symbol
pdgfra
Name
(RefSeq) platelet-derived growth factor receptor alpha
KO
K04363
platelet-derived growth factor receptor alpha [EC:
2.7.10.1
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04010
MAPK signaling pathway
one04020
Calcium signaling pathway
one04144
Endocytosis
one04510
Focal adhesion
one04540
Gap junction
one04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
115145127 (pdgfra)
04020 Calcium signaling pathway
115145127 (pdgfra)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
115145127 (pdgfra)
09144 Cellular community - eukaryotes
04510 Focal adhesion
115145127 (pdgfra)
04540 Gap junction
115145127 (pdgfra)
09142 Cell motility
04810 Regulation of actin cytoskeleton
115145127 (pdgfra)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
one01001
]
115145127 (pdgfra)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
one04090
]
115145127 (pdgfra)
Enzymes [BR:
one01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
115145127 (pdgfra)
Protein kinases [BR:
one01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
115145127 (pdgfra)
CD molecules [BR:
one04090
]
Proteins
115145127 (pdgfra)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_3
I-set
ig
Ig_2
VEGFR1-3_N_Ig-like
V-set
VEGFR-1-like_Ig-like
Receptor_2B4
Kinase-like
Motif
Other DBs
NCBI-GeneID:
115145127
NCBI-ProteinID:
XP_029542274
LinkDB
All DBs
Position
LG17:21256010..21277087
Genome browser
AA seq
1465 aa
AA seq
DB search
MDEMKTCLIIGVVLFGLVSVTCGLTPPTIVSTEDEFVLEPLSVFNISCTSKRNVAWVEPL
PVDTFVLPGYYTATLFIYNASVTHTGYYICKYQDEEGDEEDDEDNEAVIYVFVPDPKVPF
VPEEPGSMVVLVYPGETIIPCRVSDPRSPVVLKSAPSGVEVDAAYDNKIGFIGNLDAGLY
VCETIVNGVTTTSDIYTVKDNKLMEDFHVEVKASEEAVRLGEPFNITCVAPPGLAYQQQW
IHPMKQAVDAVQLKQALPDRVVYTLSIPAASSQDSGVYECSITNNFSGEIRANMVAVTVF
ENSFVMLDHSGIGAVEFVSMMEETEFTISIEAFPAPKVTWLKDGIAITENSYFLTKTRRL
AGNHYQSTLTLRQPLEEDSGNYTVVVLSIPHTAQFSFTLKVKESGPVLFQPASAPVLLPQ
REEWIVPLHTPFTLTCRGEAELAWDTPVYLSEQIEEDNSGLFITTVTVENATAGHTGFYT
CFYKGGNSTEEGEDSSIYIYVPDPEVPFVPSLVPFGNHVLNGHDEMEIQCRVSDPGANVT
LVNADTQQAVPMVVYDSKRGAVGFFSAGTYVCKALVNGEEHLSEEYIVHGWAGGSELRVE
LKAQKTALLVGDTITVICVARGSEILEDHWKYPGKLADRGLKSVRENKRDQEIQYTLTVP
QASAKDSGIYVCSITDIISNENQTKKLAITVYERPFVSLRPAFSSQESADLDEVRQFQAD
IDSFPSAQVTWLKDGLPLNDVAAEITTSLRQVSETRYQSVLTLIRAKEEDSGNYTIRVQN
GNQTHSHNFSLQVKVPAVIVDLMDLHHGSASGQSVVCIAGGMPTPKVEWFICKNIKHCAN
DSSEWVPLPTNNTEITVEAHIDQDNQLESQVIFGHLENTLAVRCLARNEMATVSREVKLV
SQDPHSELTVAAAALVLLVFVIISLIVLVIIWKQKPRYEIRWRVIESVSPDGHEYIYVDP
MQLPYDSRWEFSRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSE
KQALMSELKIMTHLGPHLNIVNLLGACTKSGPTYIITEYCFYGDLVNYLHKNRENFVSVH
PEKTKKDLDIFGINPADESSRSYVILSFESGKGDYMDMKQADTTQYVPMLEMSDASKYSD
IQRSEYNHPPSQKGDSEMDNMLSGDGNEGLSTTDLLSFTYQVARGMEFLSSKNCVHRDLA
ARNVLLSQGKIVKICDFGLARDIMHDNNYVSKGSTFLPVKWMAPESIFDNMYTTLSDVWS
YGILLWEIFSLGGTPYPGMVVDSSFYNKIKSGYRMAKPEHAPTDVYEMMMKCWNSEPEKR
PSFFSLSESVASLLPSGYKRCFERVNHEFLKSDHPAVTRVQVENDDTYVGITYKNQGKSK
DRESGFDEQRLSSDSGYIIPLPDLDPLSDDEYCKRNRHSSQTSEESAIESGSSSTLAKRE
GETLEDITLLDEMCLDSELVEDSFL
NT seq
4398 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaatgaagacatgtctcatcattggggtggtcttgtttggattggtatcggtt
acctgcggactgacgccaccgaccattgtatcaactgaagatgagtttgttctcgagcca
ctctccgttttcaacatcagctgcactagtaaaaggaacgttgcttgggtcgagccctta
ccggtcgacacattcgttttgcctggatattacacggccacgctcttcatctacaacgct
tccgtgacacacaccggatattacatctgcaaataccaagacgaagagggcgatgaagag
gatgatgaagacaatgaggcagtcatatacgtttttgtcccagatcccaaggttccgttc
gtgcccgaggagccaggtagcatggtagttctagtctatcctggtgaaaccatcatccca
tgcagggtgtcagaccctcgatccccagtggtcctaaagagtgctcccagtggagtagag
gtggacgctgcttatgacaacaagatcggcttcattggcaacctggacgctggactctac
gtctgtgagaccatcgtgaacggcgtgacaacgaccagtgacatctacaccgtgaaggac
aacaaactgatggaggacttccatgtggaggtgaaggccagcgaggaggcagtgagactg
ggggaacccttcaacatcacctgtgtagcacctccaggactggcctaccagcagcagtgg
attcaccccatgaaacaggctgtggatgcagtccagttgaagcaggctctgcctgataga
gtggtctacaccctcagtatcccagcagcctcctctcaggacagtggggtgtatgagtgc
tctatcaccaacaacttcagtggagagatcagagccaacatggtggctgtcactgtcttc
gagaactcctttgtgatgttggaccacagtgggattggagcggtggagtttgtcagtatg
atggaggagacagagttcaccatcagtattgaagccttccctgctcctaaagtcacctgg
ctgaaagatggtatcgccatcactgagaacagctacttcctcaccaagaccagacgtctg
gcgggcaaccactatcagagcactctgactcttcggcagccactagaggaggacagtggt
aactacaccgtcgtggtcctcagcatccctcacactgcccagttctccttcaccctcaaa
gtgaaagaatcaggcccagtactgttccagccagcctcagcgccagtgctgctcccccag
agagaggagtggattgttcccctccacacccccttcaccctgacctgcaggggcgaggcc
gagctggcctgggacacgcccgtctacctatcagagcagatcgaggaggacaacagcggc
ctgttcatcaccacggttaccgtagagaacgcgacagcagggcacactggcttctacacc
tgcttctacaaaggagggaactccactgaggaaggagaggacagcagcatctacatatat
gtgccagatccagaggtgcccttcgtaccctctctggtgccctttggcaaccacgtcctg
aatggtcatgatgagatggagatccagtgtcgcgtgtcagaccccggtgccaatgtgacc
ctggtcaatgctgatacccagcaggccgtgcccatggtggtttacgacagcaagaggggt
gccgtgggcttcttcagcgcaggaacctacgtctgtaaggccctcgtcaacggagaggag
cacctcagtgaggagtacatcgtccacggctgggcaggggggtcggagctgcgtgtggag
ctgaaggcccagaagacagccctcttggtgggagacaccatcactgtcatttgtgtggcc
cgggggtctgagatactggaagaccactggaagtaccctggaaaactggcggaccggggc
ttgaagtcggtgcgtgagaataagagggaccaggagatccagtacacattgactgtcccc
caggcctcagccaaagacagcggcatctatgtctgctccatcactgacatcatcagcaac
gagaaccagaccaagaagctggccatcactgtctatgagaggccattcgtgtcgctgcgc
ccggcgttcagttcacaggagtcagcagatttggatgaggtcagacagttccaggctgac
attgattcctttcccagcgctcaggtcacatggctcaaagatggcctccctctcaacgac
gtggcggctgagataaccaccagcctccggcaggtcagcgagaccaggtaccagagtgtt
ctgaccctgattcgggccaaagaggaggacagtgggaactacaccatcagagtgcagaac
gggaaccagacccacagccacaacttcagcctgcaggtcaaagtgcctgcagtcattgtg
gacctgatggacctccaccatggctcagcctcaggccagtctgtagtgtgtatcgctgga
ggcatgcccactcctaaggtggagtggttcatctgcaagaacatcaaacactgtgccaac
gactcgtctgagtgggtgcccctgcctaccaacaacacagagatcactgtggaagcgcac
atcgaccaggacaaccagctggagagtcaggtgatctttgggcatctggagaacaccttg
gctgttcgctgcctggccaggaacgagatggccaccgtcagcagggaggtcaaactggtg
tcacaagaccctcactcagagctgactgtagctgctgctgccctggtgctgctggtcttt
gtcatcatctcactcattgttctggtcattatctggaaacagaagcctcgctatgagatc
cgttggagggtgatagagtcagtgagccctgatggtcatgagtacatctacgtggacccc
atgcagctgccctatgactccagatgggagttctctcgcgatgggctcgtactgggacgt
atcctgggctctggggcgtttgggaaggtggtggagggaactgcatacggactcagccgc
tcccagcccgtcatgaaggtggccgtgaagatgctgaaacccacggcccgctccagtgag
aaacaggccctgatgtcagagctgaagattatgactcacctgggccctcacctcaacatc
gtcaacctgcttggggcctgtaccaagtcaggccccacctacatcatcactgagtactgc
ttctatggagaccttgtcaactacctgcacaagaacagagaaaactttgtcagcgtgcac
ccagagaagaccaagaaagacctggacatctttggcatcaaccctgcagacgagagcagc
aggagctatgtgatcctgtcctttgagagtggtaaaggggactacatggacatgaagcag
gcagacaccacgcagtacgtgcccatgctggagatgagtgacgcctccaagtactccgac
atccagaggtccgaatacaaccacccgccatcacagaagggtgatagtgagatggacaac
atgctgtcaggggatggtaacgagggcctcagcaccacagacctgctcagcttcacctac
caggtggccagaggcatggagttcctatcctctaagaactgtgtgcaccgggacctggct
gccaggaatgtcctgctctctcaggggaagatagtaaagatctgtgactttggcctggcc
agagacatcatgcacgacaacaactacgtctccaaaggcagcaccttcctgccagtgaag
tggatggccccggagagtatctttgacaacatgtacaccaccctcagtgacgtctggtcc
tacggcatcctcctctgggagatcttctctctaggtggcaccccatacccagggatggta
gtggactccagcttctacaacaagatcaagagtggctacaggatggccaaacctgagcat
gcccccactgatgtgtatgagatgatgatgaagtgttggaatagtgagcctgagaagagg
ccttccttcttcagcctgagtgagagcgtggcctcactgctgccttccggctacaagagg
tgtttcgagagggtgaaccatgagttcctgaagagtgaccacccggcagtgaccagggtc
caggtggagaatgacgacacctacgttgggatcacctataagaaccagggcaagtcgaaa
gacagggagagtggcttcgacgagcagcgcctcagctctgacagtggttacatcatcccc
cttcctgacctggaccccctgtctgatgacgagtactgcaagaggaatcgccacagctct
cagacgtctgaggagagtgccatagagtcgggctccagctccacgctggccaagagagaa
ggagagaccctggaggacatcaccctattggatgagatgtgtctggactcagagctggtg
gaggacagctttctgtga
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integrated database retrieval system
