Oncorhynchus nerka (sockeye salmon): 115145152
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Entry
115145152 CDS
T07952
Name
(RefSeq) nucleoprotein TPR-like isoform X1
KO
K09291
nucleoprotein TPR
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115145152
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115145152
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
115145152
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_MLP1_2
Motif
Other DBs
NCBI-GeneID:
115145152
NCBI-ProteinID:
XP_029542319
LinkDB
All DBs
Position
LG17:complement(21853891..21892673)
Genome browser
AA seq
2359 aa
AA seq
DB search
MSAVLLQALERAEITKLPKAVQNKLEKLISDLQYEIDFLKSHQEQFRVDSEQQFFEKVQR
LEQSQEQFVTQTEQHHKLREEFTKINEELKSVRENNKECEINQEKFTSEQVQFSKAKDEL
ESEKRELVHTLERRSQEVDYLSEDLQHLNNKVAEVNTTKMGLQLKLDELESSEVNIKYRE
KRMAQEKELLQDQTAWLNGELKAKSEELLALSRQKGNEILELKCSLENKEDELNRVQEQV
TSLKTSSESLQKQTEDMISKLKEAKEQHASMEEKFRNELNANIKLSNLYKGAAADSESKS
EELSGAVEELHKLLKDAVEANKALEVKLQEMDACRIKEAAELKDSISSLEKELDNANELL
SDTKLRGAASVLSEETVTTMSPTAAAVAKIVKPGMKLTELYTAYVETQEALELQRVENKR
VNKYLDDIVQEVEAKGPVLKRQRDEHERMQKSVASLSAKLEQAVKEVQRLQKVTDEANKH
SSVLERDNRRSEVQLADMAQQIRVLLIELEEARGNHVAFDEEVSSADISSTSEVITQHLV
TFRGVEELQQQNQRLLVALRELSDAQEREETETTGTKRSELERSLEKAQAELEALREQRS
HQMQLAESIVRQRDMYRVLLAQATGVSFPQQGAAPEEFSLTSTPHRSPAATPTTAAPTGI
ITMATESTEAVEAKAALRQLQEVFSSYKRERSESDKALAEQTEKLHEQVSDQRSQNAKIS
TQLEFTSKRYEMLQDNVEGYRKDIASLKEKGQKMAAVAQKNEQTVNTLTEDLRVAQEKLN
MAEGRAESLRKERDMLKLVESRLTQEKETMQTQQRGQNMLLTNLKTIQATLERSETDTRQ
RLSAQIEKQEREIGQLQKRLGHDVEQRHLLGRNQDLQLMDAKRQLETQTGLLQKTRDQLS
AAQLEMSSLRLQQGSEEGGRPSLGSQSSPSIPMGLKGLHGSKGDSEDLRGRLRQAETQAE
ELAEQLRTATSSKEQYRAMAQSLEESMDKEKQVMEQARSSMEERVKEAQEQHRHLERKLL
EAEKEKQGLQEEKRKALASVEQQVAELRRSLSSVQADHQEALQRAVVAAAQEQQAILDSQ
EQATLVSEAQDKYEREMMLHAADVEALQAAKAQALQAATLRQQLEERAQRTSAQLLEARV
SWEEQERILKEEMSKVVSRSEELQRQNSLLHEQIQTMSSKIAATLQRQVNESPLNISLTE
QGKSQDQVLEILRFVRREKEIAESRFEVAQGESLRHRLRVEHLERELRELQESFSAERER
MQVTAKTLAQHDELMKKTETMSVLMETNKMLREEKERMEQELQQTQAKVRKLELDVMPMQ
ESNAELSEKSGMLQAEKRILEEDIKRWKARTQQLVSQQKDPEEYKRLHFEKEAHLKRIQQ
LTEETGRLKAEVTRSGGSVTSLQSQVQILREGLGKVSSERDALRRDVEAKNLDIQEKFRT
ITQVRKIGRRYKAQYDELKVEHDKMVSEAASTPAQEQEAQQASAQELQGLRDSLGQSETR
TRDLEGQLDNLNKVVAEREAEVRGTQEQASGLQTELTRLRQELQEKASQEDTLRQQMSEK
EEKTRKALVGAKQKINQLIGSKDQLQKENEELKQQREELEVRVSALKSQYEGRLSRQERE
LRDLREQQERHGEQRDEPPEQGLSKAQEQQRTTEQRGPLKTTPAADRGSASTSEPPTANI
KPTPLGAQGQSKPPVNPGNKSTPRASIRPMITPATVPTPTPTATVMPTTQAENQEAMQSS
EGPLEHVTVYGSASGSVRSTSPSVQTANPVLAVQQTQTTAFVQPTQQQSLPHTEPANQEQ
PLAPVVIEAAPSSQVERPSTSTAVFGTVSATPGTSSMSKRPREEEQDTSTVTDTDTPQED
PSEPPIPKKLRIIQRVDPEEPEAQEEVLAESSTEGLVPGESHEAPESSQQVVEEYPVLDE
ADEGTASQSVPVELLLSQPTEVTLSYDSPEESPQHDVIVIVTDSESEDEQEDDEEEEPDY
DEEEEEEDDEDEEDGGMGEEGEESNEGSGDGNEAYEDDYTEGADATDPGTETEESLGASD
STQRPDDSQTHGFEGSSSMEAFSSDPTSSAPRMPRSPRRAPHPLPPRLNITQELGPPAQV
QRSMRRQSVGRVPQLTPGMASSGQHYFDDDDRMVPSTPTLGVPHRSDGLAEAIHSPQVSG
VPRFRFGTPEDLISQTSHSELGQLASQGGSGLGMYDSPLFLPGHEDESGGRSVPTTPLQV
AAPVSTFTEVPPSDCTEHSSLSVPMVTSSTPGQAVAGGPPPGDERDVLMESEGDRVEVSL
EPVASQAGEMEEPAQPSDDASLPSTSQEPSSSSADTSSTQPKPSRPGPSRQLQRWTENHM
RRGTLPSRGVTGTGRRFAR
NT seq
7080 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcagtgctactacaagctctggagcgcgctgagataacgaaactcccgaaagct
gttcaaaataaactggaaaagctcatctctgatctgcaatatgaaatagatttcctcaag
tcacaccaggagcaatttagagttgatagtgaacaacagttctttgagaaagtgcagcgt
cttgagcagagtcaggaacagtttgtgacccagactgaacagcaccacaaactccgagag
gagttcaccaagatcaatgaagaactcaagagtgtgcgggaaaataataaagagtgtgaa
atcaaccaagaaaagtttacatctgaacaggtccagttctcaaaagccaaagatgaactg
gagtcagagaagagggagcttgtgcatacactggagaggagatctcaggaagtggactat
ctgagtgaggacttgcagcacctcaataacaaagtggcagaagtgaatacaacaaagatg
gggctgcagctcaagctggacgagctcgaatcctcagaggtcaacatcaagtaccgggag
aagcgtatggcgcaggagaaggagctgttgcaggaccagacggcctggctgaatggagag
ctcaaggctaagagtgaggagctgctggccctgtcacgtcagaagggcaacgagatcctg
gagctcaagtgcagccttgagaacaaagaggatgagttgaacagagtccaggaacaagtg
acaagtttaaagacttcaagtgaaagccttcagaagcagactgaagacatgatcagcaaa
ctgaaagaggctaaggagcagcatgctagcatggaggagaagtttaggaatgagctgaat
gccaacataaagctctccaacttgtacaagggagctgctgcagactctgagtccaagagt
gaggagttgagtggggctgtagaggagctgcacaagctgctgaaggatgctgtagaagca
aacaaggccctggaggtgaaactgcaggagatggatgcctgtcggatcaaggaggctgct
gagctgaaggacagtatctccagtctggagaaagaactggacaacgccaacgaacttctg
tccgacaccaagctcagaggtgcagcctcagtgctgtcagaggaaacggtgaccaccatg
tccccaactgcagccgccgtggccaagattgtcaaacctggcatgaagctgactgagttg
tatacggcgtatgtggagacccaggaggcgctggagctgcagcgtgtggagaacaaacgg
gtgaataagtacctggatgacatagtgcaggaggtggaggccaagggtcccgtcctcaaa
cgccagcgggacgaacatgagcgcatgcagaagtctgtggccagcctgtcggccaagctg
gaacaggcagttaaggaggtgcaacgtctgcagaaggtgactgacgaggccaacaagcac
tcttctgtcctggagagagacaaccgtaggtctgaggtgcaactggcagacatggcacag
cagatccgtgtcctactcattgagctggaggaggcacgtggcaaccacgtagcattcgat
gaggaggtgagctctgctgacatcagcagcacgtcagaggtcatcacacagcacctggtg
acgttccgtggcgtggaggagctccagcagcagaaccagcgcctcctggtggccctccga
gagctcagcgacgcacaggagagagaggagactgagaccacaggcaccaagcgcagtgag
ctggagcggagtctggagaaggcccaggcagagctggaggctctgagggagcagcggagc
caccagatgcagctggctgagtccattgtcaggcagagagacatgtaccgtgtgctgctg
gctcaggccactggagtcagcttccctcagcaaggtgcagcacccgaggaattctccctg
acctccaccccccaccgctccccagctgccacccccaccacagccgcgcccactggaatc
attacaatggcgacagagtcaactgaggcggtggaggccaaggcagccctccgacagttg
caggaggtgttctcctcctataagagggagaggtctgagagtgacaaggccctggcggaa
cagactgagaaactacatgagcaggtgtctgaccagagatcacagaatgccaagatatcc
acccaactggagtttacctccaagaggtatgagatgctgcaggataatgtggagggctac
aggaaggatattgcctctttgaaggagaagggacagaagatggctgctgtagcccagaag
aatgagcaaactgttaacaccttgacagaggacctgagagttgcacaggagaaactcaac
atggcagagggtcgtgctgagagcctcaggaaggagagggatatgctgaagctagtggag
tccagactgacccaggagaaagagaccatgcagacccaacaacgaggacagaacatgctg
ctcaccaatctcaagaccatacaggccacattggagcgctcagagacggacaccaggcag
cgcctgagcgcccagatagagaagcaggaaagagagatcggccagctgcagaagagactg
gggcacgatgtggagcaacgccacctgctgggcagaaaccaagatttgcagctgatggat
gccaaaaggcagctggagacccagacaggcctgctccagaagaccagggatcagctgagt
gctgcccagctggagatgagctctctcaggctgcagcagggcagtgaagaaggtggccgt
ccgtccctgggctcccaaagctccccgtccattcccatgggcctcaaaggactccatggt
tcaaaaggggactctgaggatctgcgtggccgcctgaggcaggccgagacgcaggcagag
gagctggcagagcagttgaggacagccacctccagcaaagagcagtacagagccatggcc
cagagcctagaggagtccatggataaggagaagcaggtgatggagcaggctcggtcctcc
atggaggagcgtgtaaaggaggctcaggagcagcaccgtcatctggagagaaagctcctg
gaggcagagaaggagaagcagggcctacaggaggagaagaggaaagccctggcctccgta
gagcagcaggtggctgagctgaggaggagtctgagcagtgtgcaggcggaccaccaggag
gcgctacagagggcggtggtggcagcagcccaggaacagcaggccatactggacagccag
gagcaggccacgctggtgtcagaggcgcaggataagtacgagcgtgagatgatgcttcac
gctgcagacgtggaggccctccaggcagcgaaggcccaggctctgcaggcagccacgctc
agacagcagctggaggagagggctcagagaacctctgctcagctgctggaggccagagtc
tcctgggaggaacaggagaggatcctcaaggaggagatgtctaaggtggtgtctcgctct
gaggagctgcagaggcaaaacagcctcctccatgaacagattcagaccatgagcagcaag
atagccgccaccctgcagcgccaggtcaacgagagccctctgaacatctccctcactgag
cagggaaagtctcaggaccaggttctcgagatactcaggtttgtgcgtcgggagaaggag
atagcggagtcacggttcgaggtggcccagggagaaagtcttcgtcacaggctgagagtg
gagcacctggagagagagctgagagaactgcaggagagctttagtgctgagcgggaaagg
atgcaggtgacagctaagaccctggctcagcacgatgagctgatgaagaagactgagacc
atgagtgtcctgatggagaccaacaagatgctgagagaggagaaggagaggatggagcag
gagctgcagcagacacaggctaaagtgcgtaagctggagttagacgtaatgcccatgcag
gagtccaacgctgagctgagtgagaagagcggcatgctgcaggcagagaagaggattctg
gaagaggacatcaaacgctggaaggccagaacacagcaactggtgagccagcagaaggac
ccggaggagtacaagcgtctccactttgagaaagaggctcacctcaaacgcatccagcaa
ctcactgaggagacaggcaggctcaaggctgaggtgaccaggagtggcgggtcggtgacg
tccctgcagagccaggtgcagatcctgcgtgaaggcctggggaaggtgagctctgagagg
gatgcactgaggagggacgtggaggccaagaacctggacatccaggagaagttccgcacc
atcactcaggtcaggaagatcggccggcgctacaaggcccagtatgatgagctcaaggtg
gagcacgacaagatggtgtcagaggcagcatccacaccagcccaggagcaggaggcccag
caagcctcagcccaggagctccagggtctaagagactccctgggacagtctgaaacccgg
actagagacctggagggacagctggataacctcaacaaggtggtggctgagcgtgaggca
gaggtgcgtgggacccaggagcaggcctccgggctgcagacggagctgaccaggttgaga
caggagctgcaggagaaggcctcccaggaggacaccctcagacagcagatgtctgagaag
gaggagaagaccaggaaagccttggtaggggccaagcagaagatcaaccagctcatcggc
tccaaggaccagctgcagaaggagaacgaggaactgaagcaacagagggaggagctggag
gtcagggtcagtgctctgaagtcacagtacgagggccgtctgagccgacaggagagggag
ctgcgggacctgagggagcagcaggagagacacggggagcagagggacgagcctcctgaa
cagggcctcagcaaggcccaggaacagcagaggaccaccgagcagagaggaccactgaag
accaccccagctgcagacaggggcagcgccagtacctcagagccccccactgccaacatc
aagcccactcctctgggggcccagggccagagcaagccccctgtcaaccccgggaacaag
tccactccccgggccagcatccggcccatgatcacccccgccactgtgcccacccccact
cctactgctactgtcatgcccacaacacaggcggagaaccaggaagccatgcagtcttct
gagggcccgctggagcatgtgaccgtgtatggcagtgccagcggttcagtacggtcaacc
agccccagcgttcagaccgccaacccagtgctggcggtccagcagacccagaccacagcc
ttcgtccaaccaacacagcaacagagcctgccccacactgaaccagccaatcaggagcag
cccctggccccagtcgtcattgaagctgcacccagctcgcaagtggagaggccttcgacg
tccacagctgtgtttgggacagtttcagccaccccagggacatcctccatgtccaagaga
ccgcgtgaggaggagcaggacacctctacggtgactgacacggacaccccccaggaggac
ccatctgaaccccccatccccaagaagctacgcatcatacagagggtggacccagaggag
ccagaggcccaggaggaggtgctggctgagagcagtacagagggattggtgcctggagag
agccacgaggccccagagagcagccagcaggtggtggaggagtacccagtactagacgag
gctgatgaggggacagcgtctcagtctgtccccgtagagctactcctgtcccagcccaca
gaggtcacactctcatacgactcccccgaagaatcccctcagcacgacgtcatcgtcata
gtgactgactcggagagcgaggatgagcaggaggatgacgaggaagaggaaccggactat
gatgaggaggaggaggaggaggatgatgaggatgaagaggatggcgggatgggagaagag
ggagaggagagcaacgaaggtagcggagacggcaacgaggcatacgaagacgactacaca
gagggtgctgacgcgacagaccccggcacggagacagaggagagtctaggagcatcagac
tccactcagcgcccggacgactcccagacacacggctttgagggcagcagcagtatggaa
gccttctccagtgacccaaccagttctgctcccagaatgccccggtcaccacggagggca
ccccacccgctgcccccccgtctcaacatcacccaggaactgggcccccctgctcaggta
cagcgctccatgcgtcgccagtctgtaggcagagtccctcagctcacccctgggatggcc
agcagcggacagcactactttgacgatgatgacaggatggtacccagtactcctactctg
ggggtgccacaccgctctgacggcttagcagaagctatccattctccccaggtgtctggt
gttccccgattccggttcggcaccccagaggacctgatatcccagacctcccactctgaa
ctgggacagctggcatcacaaggaggtagtggtctggggatgtatgatagtcctctgttc
ctgccaggtcatgaggatgagtctgggggccgcagtgttcccacgacacccctgcaggtg
gctgccccagtgtccacattcacagaggtcccgccctctgactgcaccgaacactcctcc
ctgtctgttcctatggtaaccagctctaccccgggccaggcggtagctggaggaccccct
cctggggacgaaagagatgtcttaatggagtctgagggagaccgtgtggaggtgtctctg
gagccggtggcgtctcaggcaggtgagatggaggaacctgcccagccctcagacgacgca
agcctgccttctaccagccaggaaccctcctccagctctgcagacactagtagcactcag
cccaaaccctctagaccaggacccagccgtcagctccaacgctggacagagaaccatatg
aggagagggacgttgccatcacggggtgtaactgggacagggaggagattcgccagatga
DBGET
integrated database retrieval system
