Oncorhynchus nerka (sockeye salmon): 115145285
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Entry
115145285 CDS
T07952
Name
(RefSeq) Hermansky-Pudlak syndrome 3 protein-like
KO
K20190
Hermansky-Pudlak syndrome 3 protein
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115145285
Membrane trafficking [BR:
one04131
]
Endosome - Lysosome transport
Others
BLOC-2 complex
115145285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HPS3_C
HPS3_N
DUF5119
Motif
Other DBs
NCBI-GeneID:
115145285
NCBI-ProteinID:
XP_029542594
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All DBs
Position
LG17:complement(29634756..29661826)
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AA seq
1049 aa
AA seq
DB search
MVHVYNCHPFASQQIVQAEQEPGLVCCGGGVLFVESAGGCKIEAFQLEAEGCPLICRFAT
MGTVQSILHSEIGDYLVTIEEKNNVTYLRTYTNWRYQVAEKTRVGVRLLGHFLRGSSMHG
APKEQMEIIEIPLFERPLCVACCGVTGDLLVGCPKSLVLFSLKRQALNDKLSILDFERCL
ILHLPGLSPQQVAICAGYIALQAELEVLVVKLERLPGSAPTQKSADKKSQDQCLVPKDMI
TGAEHNNEIEVRKEGLAGHLDQDDFFIFPKHQELLGDRAKDCGVKVSLEWTGMESEARGI
LAITYILYRRFAPDFFQGCSVEDTRLHSLQFHPVFTSNQEVCAEGGRGVEPTCVFCFFSL
PNTGYVYSVRGGVEMVSVYQYPEKAQQAVLTDLFLHIITKNALQCFSVRCSAVAARAEDP
YIDTTMKACPPITMEVCALRIQLFIGLKALCHDRHHIVLLTAADVETREDTERAARRNLN
RKSSSTKHRDPIEMSRGWNLYVVNTVPPLQLYNEMVEYSKKYEETNPLSQSCLHLLSEAH
LLLRATLLDPRVGNPVEQPQSSDQNLARSLGYTATDKIGSTTDRTTDRQELQQAFQESCA
HLGDCFSRFDKRDCHLALPYYKMSGLSVTEVISRNRCLSSSPCGYGKGFLFFLKHSLYEE
TMEELTEETANEVLDIFGVAEPSQLPHVISSPSMVRASPDSGLAHLERLESIGAPSVPLT
LSKAALALRMGDLQLYRQHMDRHTEMLQVYGFIEEHKLLLHGRGHTVVPTPLARHLRDSQ
EGLLVAAMVALHENNKVKLDEADLFFQKLCGNLSGPQGGPQLLVDFWEALLMASSQEAVI
QELLFRLTSVYIDRVTRRDSQGMKPLKTADDLINSCSHYGVPYPWVSILTPAHFSIIQDH
QEDLQKLQSLLCGPTLDVSSILPLLEQLPDGDNAGLSVHLLCATKLDRHESSIERLLDRC
PQAIIPYANHELQNNKMTLWWQKLFPELCERTRAAGGENTILLSALKETLVVVAMELNPL
EFLDLLPDDGTAHFFLPHLLECSQRNLMT
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atggttcacgtatacaactgccatccattcgcttcccagcaaatcgtgcaagccgaacag
gagcctgggttagtgtgttgtggcgggggtgtcttgtttgtggagtccgcgggaggatgc
aagatcgaggcatttcaactggaagcggaggggtgtcctctcatctgccgcttcgccacc
atggggactgtgcagagcatcctgcacagcgagataggggactacctggtgaccatcgag
gagaagaacaatgtcacctacctccgcacctacaccaactggcgctaccaggtggccgag
aagacacgtgtgggtgtgcgtctgctgggccacttcctgcgtggctcatccatgcatggg
gctcccaaggagcagatggagatcattgagattccgctgtttgagcgcccactgtgtgta
gcgtgctgtggggtgacaggggacctgctggtgggctgtcctaagagcctggtgctgttc
agtctcaagagacaggccctcaacgataagctctccatcctggactttgagcgttgtctg
atcctccacctcccaggactgtcgccccaacaggtggcgatctgtgcggggtacattgcc
ctgcaggcagagctcgaagtgctggtggtcaagctggagagacttcctggctccgcccct
acccagaagtcagctgacaagaagtcccaggaccaatgtctagtccccaaggatatgatc
actggagcagaacacaacaatgagatagaggtgaggaaagagggtcttgctggtcacctt
gatcaggatgacttcttcatattccctaagcaccaggagctgctgggggacagggctaag
gactgtggggtcaaggtctctctggagtggacaggcatggagagtgaggccaggggtatc
ctcgctatcacctatatcttatacagacgttttgctccagacttcttccaaggctgcagt
gtggaggatacccgcctgcactccctgcagttccaccctgtattcaccagtaaccaggaa
gtgtgtgctgagggggggagaggggtggagccgacgtgtgtgttctgtttcttctcgctg
cccaacacgggctacgtgtacagtgtgaggggtggagtggagatggtctcagtctatcag
tatccagagaaagcccagcaggctgtcctcactgacctcttcctccacatcatcaccaag
aatgctctccagtgtttctcagtgaggtgttctgcagtggcagccagagctgaggaccct
tacatcgataccaccatgaaggcctgtcctcccatcaccatggaggtgtgtgctttgcgg
atccagctgttcattggtctaaaggctctgtgtcacgatcgccaccacatcgtcctgcta
accgctgcagacgtggagaccagggaggacacagagagggcagctcgcaggaacctgaac
aggaagtcatcctccaccaagcaccgggatcccattgagatgagtcgcggctggaatcta
tacgtggtcaacaccgtccccccactccaactctacaatgagatggtggagtatagtaag
aagtatgaggagaccaaccctctgtctcagagctgtctgcacctgctcagtgaggcccac
ctcctcctgagagccacgctcctggacccccgggtgggaaatccagtggagcagcctcag
agcagtgaccagaacctagcccggtccctgggatatacagcaacagacaaaataggcagc
accactgacagaaccacagacagacaggagctacagcaggccttccaggagagctgtgcc
catttaggagactgcttcagtaggtttgataagcgtgactgccacctggccctgccctac
tataagatgtcaggcctgtctgtgacagaggtgatctccaggaacaggtgtctgtccagc
agcccctgtggctatgggaaggggttcctcttcttcctcaaacactcactctatgaggag
accatggaggagctcactgaggagacagccaacgaggtgctggatatcttcggtgtggcc
gagccgtcccagctcccccatgttatatccagcccctccatggtcagagccagccctgac
agtggcctggcccacctagagcgcctggagtccatcggagccccctctgtacccctcact
ctctccaaggctgccctggccctccgcatgggagacctgcagctctacagacaacacatg
gacagacacacagagatgctgcaggtatatgggttcatcgaggagcacaaactgctgctg
catggcagagggcacacggtggtgcccacccccctggcacgccacctcagggacagccag
gaaggtctgctggtagcagccatggttgcgctacacgagaataacaaggtcaaactggac
gaggctgacctcttcttccagaagctttgtgggaacctgtcagggccccagggaggccct
cagctgctggtggacttctgggaggccctgctgatggcctcatcacaggaagctgtcatc
caggagctgctgttccgcctcacctctgtctacattgaccgcgtcacgcgccgagacagc
caaggcatgaaaccactcaagaccgcagacgacctgatcaactcatgttctcactatggt
gtgccgtatccctgggtcagcatcctgactccagctcacttcagtatcattcaagatcac
caggaggacctccagaaactacagtccctgctgtgcggacccaccctggatgtgtcgtcc
atcctgcccctgttggagcagctgccagacggggacaacgcagggctcagtgtgcacttg
ctctgtgccaccaagctggaccgccacgagagctccatcgagaggcttctagaccgatgt
cctcaggcaatcatcccctacgctaaccacgagctgcagaataacaaaatgactctgtgg
tggcagaaactgtttcctgagctgtgtgagagaaccagagcagcagggggagagaacacc
atcttactgtctgcactcaaagaaacgctggtggtggttgccatggagctgaatccactg
gagtttctggacctgttgcctgatgacgggacggcacacttcttcctgcctcacctgctg
gagtgcagccagagaaatctcatgacgtaa
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