Oncorhynchus nerka (sockeye salmon): 115145754
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Entry
115145754 CDS
T07952
Name
(RefSeq) ATP-binding cassette sub-family A member 1-like isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one02010
ABC transporters
one04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
115145754
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
115145754
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
one02000
]
115145754
Transporters [BR:
one02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
115145754
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
115145754
NCBI-ProteinID:
XP_029543108
LinkDB
All DBs
Position
LG18:5781079..5821788
Genome browser
AA seq
2283 aa
AA seq
DB search
MAISTQLGLLLWKNFTYRRRQTLQLIIEIIWPLFIFFILISVRMHYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRHPTPGESPGLVGNFNDSIISRLFIDAKKILLYSQNDK
SFEGYKVLVRALGKLQSNTAGFKLKDFLRDKETLSSFLHRNASLSHHAVQQIVEADLNLE
KVLIGGFGVHLRDMCNTTSLEEFVTISDKNVSRLTQDIICKASPDWLNKAQDHFLSNLDF
LKPIRKDVKSDPEVVQKVSTATDGLLESLGALAVELASMKSWKEMRNEILYLTANATGSP
SHMYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGNRGGNGSDDEPVSAYDNTSTPY
CNSMMRSLEASPVSRMIWRALKPLLMGKILYTPDTPATQRIIHEMNKTFQELGILRDLGG
MWEEVRPKIWTFMESSEEMNLVRTLLQNNASARFFNDRLAGTEWKVEDVSRFLTKAAEDK
RPAGSAYTWREVFGETDDAIKTISRFMECVNLDKLEPVANEERLVNKSMGLLDNQKFWAG
IVFPDIARSNSSDLPGNVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGGFS
YLQDVIEQGIIRAVTGSQEKTGVYIQQMPYPCYVDDMFLRVMSRSMPLFMTLAWMYSVAL
IIKGVVYEKEARLKETMRIMGLDNGILWLSWFISSLIPLLISASLLVVILKMGNLLPYSD
PCVVFLFLASFAVVTIMQCFLISTIFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFG
AKVIVSLLSPVAFGFGCEYFALFEEQGVGIQWSNLLSSPLEEDSYSLTTSICLMLFDSFL
YGVMTWYIEAVFPGQYGIPRPWYFPFTKSYWCGEKQGKNIQERKEGNAEAVCIEEEPSHI
EPGVYIKNLVKVYSHGNKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSG
TAYILGKDIRSELSAIRQNLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEKVKAEMEQI
VNDIGLPHKRKCRSNTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLL
KYRAGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTQLGTGYYLTLVKRDFD
LTLSSCRNSSSSSSVSYSKKVGLPQPQPQALTVLKEDSVSESSSDAGLGSEPESEATTID
VTMISNVIFKHVPAARLVEDLGHELTYVLPYKAAKGGAFVELFHEIDDRLSDLGISSYGI
SDTTLEEIFLKVAEDSGVDVAELPNSDGTIPARRHRRHAFGDHQSCLKPFNEDDAFDFND
SEGDPESRETDWLGGSDGKGSYQVKGWRLIRQQFVALIWKRFLYARRSRKGFFAQIVLPA
VFVCIALVFSLIVPPFGKYPSLELEPGMYEEQFTFISNDAPEDADTNKLLGALTNYDGFG
SRCNSPHAPCNTLDDEWVVPEVPESVRDIFMNGNWSMENPSPLCECSCEGRKKMLPECPA
GAGGLPPPQVKISDQGTLQNLTGRNISDYLVKTYAQIIGKSLKNKISVNEFRYGGFSLGA
RNTQLLPPGDDVDQAISEIRRRFHLERGTAADRFLASLSSFIQGLDTKNNVKIWFNNKGW
HSIGSFLNVMNNGILRASLPAGQDPSKYGIQAFNHPLNLTKEQLSQVALMTTSVDVLVSI
CVIFAMSFVPASFVVFLIQERVNKAKHMQFISGVQPFLYWLSNFIWDMCNYIVPATLVII
IFICFQQDAYVSSTNLPVLALLLLFYGWSITPLMYPASFFFKIPSTAYVVLTSVNILIGI
NGSVSTFVLELFGSNEIGGINDILKNVFLIFPHFCLGRGLIDMVKNQAMADALERFGENR
FRSPLAWDMVGKNLFAMAVQGVVFFTITVLIQYRFCIKARSMSTDQKPIGEEDEDVARER
QRILGGGGQSDILELKQLTKVYNRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTSTFKML
TGDSIVTSGEAYLAGKSVLTEINEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPEK
EVCEVAEWGIRKLGLIKYVDKAAGSYSGGNMRKLSTAMALIGGPPVVFLDEPTTGMDPKA
RRALWNCILSIVKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGY
TIILRVAGPDPDLRPVMEFIEKELPGSTLKEKHRNMLQYQLSSSKTSLARIFSILAKNKE
WLHIEDYSVSQTTLDQVFVNFAKDQSDEDHLKDISMHKRDAVAVDITQLKSFLTDEKARE
SCV
NT seq
6852 nt
NT seq
+upstream
nt +downstream
nt
atggccatctctactcaactgggcttactgctgtggaagaacttcacctacagacggaga
cagacactccagctaattatcgagataatatggccgctcttcatcttcttcatcctcata
tctgtgaggatgcattacccgccctacgagcaacatgagtgccatttccccaacaaggcc
atgccctcggcgggcaccttgccctgggtacaagggatcatctgtaacgccaacaacccc
tgcttccgccaccccacaccaggagagagcccagggctggtgggcaacttcaacgattct
ataatctcccgtctgttcatcgatgccaagaagatcctcctctacagccagaatgacaag
agcttcgagggctacaaagttctggtgcgggctctggggaaactacagagcaacacggca
ggtttcaagctgaaggactttctccgtgataaggagaccttatcgtcgttcctgcatcgc
aacgcctccctatcccatcacgccgtccagcagattgtcgaggctgacctcaacctagag
aaggtcctgattggaggtttcggcgtccatcttagagatatgtgtaacaccacttctctg
gaggagtttgtgaccatctccgacaagaatgtgtcacggctcactcaagacatcatctgc
aaggcctcccctgattggctgaacaaggcccaggaccacttcctgtccaacctggacttc
ctgaaacccatacggaaggacgtgaagtccgaccctgaggtcgtccagaaggtatccacg
gcaaccgacggtctgctggagagcttgggagcgctggctgtagagctggccagtatgaag
agttggaaggagatgcgtaacgagatcctttacctgacggccaacgccacgggctccccc
agccacatgtaccaggccgtgtcccgtatcgtctgtggccaccccgagggcggcggactg
aagatcaagtcgctcaactggtacgaggacaacaactacaaggccctgttcggtaaccgt
ggcggcaacggcagtgacgacgaacccgtgtccgcctacgacaacacctcaactccgtac
tgtaacagcatgatgaggagtctggaagccagccccgtctccaggatgatctggagggcc
ctgaagcctctcctcatgggaaagatcctgtacacccccgacactcccgccacacagagg
atcatacacgagatgaacaagacgttccaggagctgggtatcctgagggacctgggtggg
atgtgggaggaggtgaggcctaaaatctggaccttcatggagagcagtgaggagatgaac
ctggttcggacgctgcttcagaacaacgccagtgcccgcttcttcaacgaccgtctggct
ggcacagagtggaaggtggaggacgtgtcccgcttcctgaccaaggctgcggaggacaaa
cgccccgccggctcggcctacacctggagagaggtgttcggcgagaccgacgacgctatc
aagaccatctcccgctttatggagtgtgtgaacctggataaactagagccagtggccaat
gaggaaagactggtcaacaaatccatgggtctcctagacaaccagaagttctgggctggg
atagtgtttccggacatcgcccgtagcaacagttctgacctgccgggtaacgtcaactac
aagatccgcatggacatcgacaacgtggagcgcaccaacaagatcaaggacggttactgg
gaccctggtccccgggcggacccctttgaggacctgcgctacatctggggcggtttctcc
tacctgcaggacgttattgaacagggcatcatcagggcggtgacgggcagtcaagagaag
actggagtctacatccaacagatgccttacccctgctacgtggacgacatgttcctgcgg
gtgatgagtcgctccatgcctctcttcatgaccctggcctggatgtactctgtggccctc
atcatcaagggcgtggtctatgagaaggaggcgcggctcaaagagaccatgaggatcatg
ggattggacaacggcatcctgtggctcagctggttcatcagcagcctcatccccctgctc
atctccgcctcgctgctggtggtcattctcaagatggggaacctgcttccctacagcgac
ccttgcgtggtcttcctgttcctggcttcctttgctgtggtaaccatcatgcagtgcttc
ctcatcagtaccatcttctcccgtgccaacctggcggcggcctgcgggggaatcatctac
ttcaccctctacctgccctacgtcctctgtgtggcctggcaggactacgtgggcttcggg
gctaaagtcattgtgagcctgttgtccccggtggcgtttgggttcggctgtgagtacttt
gccctgtttgaggagcagggagtgggtatccagtggtccaacctgttgtctagccccttg
gaggaggacagctactccctcaccacctccatctgtctcatgctgtttgactccttcctc
tacggggtcatgacctggtacatcgaggctgtcttccctggccagtatgggatccccaga
ccctggtacttccccttcaccaagtcctactggtgtggagagaaacaagggaagaacata
caagaaagaaaggaaggaaacgcggaagctgtgtgcatcgaagaggagccgtctcacatc
gagcctggtgtttacatcaagaacctagtgaaggtgtatagccatggcaacaagttggct
gtagacgggttgaccctgggtttctacgaagggcagatcacctctttcctggggcacaac
ggagccggcaagaccaccaccatgtccatcctgacgggtctgttcccgcccacctctggc
accgcctacatcctgggcaaggacatccgctcggagctcagcgccatccgacagaacctg
ggcgtctgcccgcagcacaacgttctcttcagcatgctgacggtggaggagcacatctgg
ttctatgcccgtctgaagggtctgtctgaggagaaggtgaaggctgagatggagcagatc
gtcaacgacatcggcctgcctcacaaacgcaagtgtcgtagcaacacgttgtccgggggc
atgcagaggaaactgtcagtggcgttggcattcgttggagggtcaaaggttgtgatcctg
gatgaacccactgctggagtcgacccctacgcacgccggggaatttgggacctgcttctg
aagtatcgtgccggccgcaccatcatcctctcaactcaccacatggacgaggcggacatc
ttgggcgaccgcatcgccatcatctcccacggcaagctgtgctgcgtgggctcctccctg
ttcctgaagacccagctggggacgggctactacctgaccctggtgaagagagacttcgac
ctgaccctcagctcctgtcggaactcctccagcagcagctctgtctcctacagcaagaag
gtgggcctccctcagccgcaaccccaggccctcacagtcctaaaggaggacagtgtttcc
gagagcagctctgacgctggactgggaagtgaacctgagagtgaagccaccactattgac
gtaaccatgatctccaatgtgatcttcaagcacgtccccgctgccaggctggttgaggac
ctgggccatgaactcacctacgttctgccctacaaggcggccaaaggtggagccttcgtg
gagctcttccacgagatcgacgaccgcctctctgacctcggcatctccagctacggcatc
tcagacaccaccctggaagagattttcctgaaagtagcagaagacagtggagtggatgtt
gctgaacttcccaactctgatggcaccatcccggctcgaaggcaccgcagacatgcattc
ggagaccaccagagctgtctgaaacccttcaacgaggacgacgctttcgacttcaacgat
tcagaaggtgacccagaatctcgtgagacggactggctgggaggctcggatggtaaaggc
tcgtaccaggtcaaaggctggcgtctgattcgacagcagtttgtagcgttgatatggaaa
cgcttcctgtatgcccggcggtccaggaaaggcttcttcgctcagatcgtgcttcctgct
gtgtttgtgtgcatcgccctcgtcttcagtctcatcgtccctccgtttggaaagtacccc
agcctggagctggagcctggcatgtatgaagaacagttcaccttcatcagcaacgacgcc
cctgaggatgcagacacgaacaagctgttgggtgccctgacaaactacgatggctttggt
tcacgctgtaactcaccccatgctccttgcaacacgttggatgatgagtgggttgttcct
gaggtaccggagagtgtgagggacatctttatgaatggcaactggagtatggaaaacccc
tctcctctctgtgagtgcagctgtgaaggacgcaagaagatgctacctgaatgcccagcg
ggagctggtggtcttcctcctccacaggtgaaaatcagtgaccaaggtaccctgcaaaat
ctgactggcagaaatatctcagattacctggtcaaaacctatgctcagattatcgggaaa
agtttgaagaacaaaatctcggtcaatgaattcagatatggcggattctcattgggtgct
aggaacactcagctcctcccaccaggtgatgatgttgatcaggccatctctgagatcaga
cgacgcttccatctggaaagagggactgctgctgaccgtttcctcgctagcttatccagt
tttatccagggactggacactaagaacaacgtcaagatctggttcaacaacaaggggtgg
cacagcatcggttctttcctgaatgtgatgaacaacggaatcctgcgtgccagcctgccc
gcgggccaggaccccagcaagtatggcatccaggccttcaaccacccactcaacctcacc
aaggagcaactgtcccaggtcgcactgatgaccacctctgtggacgtgctggtgtccatc
tgcgtgatcttcgccatgtctttcgtcccggccagcttcgtagtcttcctcattcaggag
agagtcaacaaggccaaacacatgcagttcatcagtggagtgcagcccttcctctattgg
ctgtccaacttcatctgggacatgtgtaactacatcgtccctgctactctggtcattatc
atcttcatctgtttccaacaagacgcctatgtctcctccaccaacctgcctgtactggcc
ctgctgctgctgttctatgggtggtccatcacgcccctgatgtacccggcgtccttcttc
tttaagatccccagcacggcctacgtggtgctcacctccgtcaacatcctcatcggcatc
aacggcagcgtctccaccttcgtcctcgagctcttcggcagcaacgagatcggagggatc
aacgacatcctgaagaatgtgttcctgatcttccctcacttctgtctgggtcgaggcctc
atcgacatggtgaagaaccaggccatggccgacgctctggagaggtttggtgagaaccgg
ttccgttcccctctggcgtgggacatggtgggcaagaacctgttcgccatggctgtgcag
ggtgtggtcttcttcactatcaccgtgctcatccaataccgcttctgtatcaaggccaga
tctatgagcaccgaccagaaacctattggtgaagaggatgaagacgtggccagagagagg
caaaggattctgggaggagggggacagtctgacattctggaactcaagcagctgaccaag
gtgtacaatagaaaacagaaaccagcagtggatcgtctttgtgtcggaattcctccagga
gagtgttttggtcttcttggagtcaacggagcgggaaagacgagcaccttcaagatgctg
actggagactccatagtcacgagtggtgaagcttacctggcgggaaagagtgtgttgaca
gagatcaacgaggtgcaccagaacatgggctactgccctcagtttgatgctatcaacgac
ttgctgactggcagggagcacctggagttctacgccattctgaggggggttcccgagaag
gaagtgtgtgaggtggcagagtggggcatccgtaaactaggcctgatcaagtatgtggac
aaggcagcagggagctacagtggagggaacatgaggaaactctccacggccatggcactg
atcggtggtccaccagtggtcttcctggacgagcccaccactggtatggaccccaaggcc
agacgggctctgtggaactgcattctcagtatcgtcaaggaggggcgatcggtggttctc
acctcgcacagtatggaggagtgtgaggccctgtgtacgcggatggccatcatggtcaat
gggaggttccgctgcctgggcagcgtacagcacttaaagaatagatttggggatggctac
accatcatcctccgggtggcaggacctgacccggacctgaggccggtgatggagttcatt
gagaaggagcttccaggcagcactctgaaggagaagcacaggaacatgctgcaatatcag
ctgtcctcctccaaaacctccctggcacgcatcttcagcatcctggccaagaacaaggag
tggctgcacattgaggactactccgtttcccagacaacactagaccaagtatttgtcaat
ttcgccaaggaccaaagtgacgaggaccacttaaaagacatttcaatgcacaagagagac
gcggtggcagtggacattactcagctcaagtctttcctcacagacgagaaggccagggag
agctgcgtgtga
DBGET
integrated database retrieval system
