Oncorhynchus nerka (sockeye salmon): 115145815
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Entry
115145815 CDS
T07952
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115145815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
one03041
]
115145815
03009 Ribosome biogenesis [BR:
one03009
]
115145815
Enzymes [BR:
one01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115145815
Spliceosome [BR:
one03041
]
Complex A
U2 snRNP components
U2 related factors
115145815
Complex B
115145815
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
115145815
Ribosome biogenesis [BR:
one03009
]
Eukaryotic type
90S particles
Helicases
115145815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_25
nSTAND3
SRP54
Flavi_DEAD
DUF3915
AAA_29
Motif
Other DBs
NCBI-GeneID:
115145815
NCBI-ProteinID:
XP_029543218
EnsemblRapid:
ENSONEG00000023620
LinkDB
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Position
LG18:complement(8374905..8393639)
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AA seq
759 aa
AA seq
DB search
MSKRHRLDLGDDYSNKKRSDGKDRDRDRDRDERSKDRDRDRDRDRDRDRDVKPSVLPPNT
MMAGGGMLPLKQTAMQQQINPFTNLPHTPRYYEILKKRLQLPVWEYKERFNDILARHQSF
VLVGETGSGKTTQIPQWCVDMVKGLGGPKKAVACTQPRRVAAMSVAQRVADEMDVMLGQE
VGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVL
KEVVRQRSDLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYLEAAI
RTVVQIHMCEEEEGDCLLFLTGQEEIDEACKRIKREIDDLGPEVGDIKVIPLYSTLPPQQ
QQRIFEAAPPRKPSGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESL
LVTAISKASAQQRAGRAGRTRPGKTFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKK
LGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVI
ASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHAFKQ
NHESTQWCYDNFVNYRSLMSADNVRSQLSRIMDRFNLPRRSTEFTSRDYYINIRRALVTG
FFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCSDIKPE
WLVKVAPQYYEMGNFPQCEAKRQLERIVAKLQTKEYSQY
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaagacaccgtttagatttaggcgatgactactcaaataaaaagagatctgat
gggaaagaccgagatcgcgacagggaccgagacgaacgctctaaagacagggaccgcgac
agagatcgggaccgggaccgagatagggatgtgaagccctctgtcctgccccccaacacc
atgatggccgggggaggcatgctgcctctcaagcagacagccatgcagcagcagatcaac
ccgttcacaaacctgccccacacgccgcgctactatgagatcctgaagaagaggctgcaa
ctgcctgtgtgggagtacaaggagcgcttcaacgacatcctggcacgccaccagagcttc
gtgcttgtcggagagacgggctccgggaaaaccacacagatcccccagtggtgtgtggac
atggtgaagggcttgggtggccccaagaaggcagtggcctgtacccagcccaggagggtg
gcagccatgagcgtggcccagagggtggctgacgagatggacgtcatgctgggccaagag
gtgggatactccatacgatttgaggactgcagctccgccaagaccatactgaagtatatg
acagacggtatgttgcttcgggaagccatgaacgaccccctgctggagcggtatggcgtg
atcatcctggatgaggcccacgagagaactctggccacagacatcctaatgggagtcctg
aaggaggtggtccgacagaggtcagacctcaaggtgattgtgatgagcgctacgttagac
gccgggaagttccaagtgtactttgacagctgtccactgctgactattcccggacgcaca
caccccgtggagatcttctacacccctgagccggagcgggactacctggaagccgccatc
cgcacggtcgttcagatccacatgtgtgaggaagaggagggggactgtctgctgttcctc
actggacaagaggaaattgacgaggcctgtaaacggatcaaacgggagatcgacgacttg
ggacctgaagtcggagacatcaaagtcattccactatattccacactgcccccccagcag
caacaaagaatctttgaggccgcaccccccaggaagcccagcggtgcgataggaagaaag
gttgtggtttccacaaacattgctgagacatcccttaccatcgacggagtggtgtttgtg
atcgatcccggttttgccaagcaaaaggtgtacaaccctcgtatcagggtggagtctctc
ctggtcacggcgatcagcaaagcctcggcgcagcagagggcgggccgcgctggcaggaca
cggccagggaagactttccgtctatacactgagaaagcctacaagaccgagatgcaggac
aacacgtatcccgagattctccggtccaacttgggttctgtcgtgttgcagttgaagaag
ctgggtatcgatgacctggtgcactttgacttcatggatccaccagccccggagaccctg
atgcgggcgctggagctgctcaactacttggcggcgctcaacgacgacggcgacctgaca
gagctgggctccatgatggcagagttcccgttggacccccagctggccaagatggtgatc
gccagctgcgagttcaactgctccaacgagatcctctccatcaccgccatgctgtcagtc
ccgcagtgtttcgtccgccccaccgaggctaagaaggcggcggacgagtccaagatgcgg
ttcgcccacattgacggagaccacctgacgctcctcaacgtctaccacgccttcaaacaa
aaccacgagtctacacagtggtgctacgacaactttgtgaactaccgttcgctgatgtcg
gccgacaacgtgcgctcgcagctgtcccggatcatggaccgcttcaacctgccccggcgc
agcaccgaattcaccagcagagactactacatcaacatccgccgagcgctcgtcacaggc
tttttcatgcaggtggctcatttggagcgcacgggccattacctcacagtcaaggacaac
caggtggtccagctacacccatctaccgtcctggaccacaagccagagtgggtgctctac
aatgagtttgtcctcaccaccaagaactacattcgcacctgctcggatatcaaaccggaa
tggctggtgaaggttgctcctcagtactacgaaatgggcaacttcccacagtgtgaagcc
aagaggcagttggagcgaatcgttgccaaactccagacaaaggagtattcccagtactga
DBGET
integrated database retrieval system