Oncorhynchus nerka (sockeye salmon): 115146011
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Entry
115146011 CDS
T07952
Symbol
npas3
Name
(RefSeq) neuronal PAS domain-containing protein 3 isoform X1
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115146011 (npas3)
Transcription factors [BR:
one03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
115146011 (npas3)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS
PAS_11
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
115146011
NCBI-ProteinID:
XP_029543607
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All DBs
Position
LG18:complement(21000023..21291604)
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AA seq
1030 aa
AA seq
DB search
MIRIFPDFSVQVTAAGGGAGGMPSGPAVGRIPGTTNGNPQNVQGITSYQQREIKTLHPFC
MEGSEEEAIVDAQFMSKFPHDPYWERPANASSCSASRPKTLHLGGGQQHTSSPWLQALRK
EKSRDAARSRRGKENFEFYELAKMLPLPGAITSQLDKASIIRLTISYLKMRDFANQGDPP
WNLRIEGPPPNTSVKAIGVQRRRTPSAVASEIFEPHLGSHILQSLDGFVFALNKEGRFLY
ISETVSIYLGLSQVELTGSSVFDYVHPGDHVEMAEQLGMKLPPGRGLLSQGTATEDGASS
ASSSSHAETPEPVESTSPSLLSPDNTLERSFFIRMKSTLTKRGVHIKSSGYKVIHVTGRL
RIRMALTHSRSVPIQIMGMVVVAHALPPPTINEVRIDCQMFVTRVNMDLNIVYCENRISD
YMDLTPVDIVGKRCYQFIHAEDVEGIRHSHLDLINKGQCVTKYYRWIQKNGGYIWIQSSA
TIAINAKNANEKNIIWVNYVLSNPEYKDTPMDIAQLPNLPEKASESSETSDSESESKENS
EDNENSKSDGKGNQTENSEDPETDSKKQQQGQSSSEQEMRRQEEGDSSSNPESQESEDDL
EPSDCELETKERRLGRLGGLHIKVEHYGDRDGRVELHNSPSSSEEEEDDDDDEEDDDDDD
SVKDCDRATEMLAVPAASKQQKRKKRRKKQKWDGSRSRRLRLSSATTSPGTMNHPTLGGD
APLLLPPSPASASVLKIKTEMSEPINFDNDSSIWNYPPNREISRNESPYSMTKHVPTHDT
FPSPQPGSLQVSIPDSVLTPPGTEGGGGGGGTRKGVPPSFNGNSSAPSSASSVASLAPPS
SSGSSSDPLSPPLSASPRDKQQGQGTPTTSNSSSSLLYTSDLEALQRLQAGNVVLPLVHR
VTGTLATTSTAASRVYTTGTIRYAPADVTLAMQAGANLLPNNVAHAMNFVDVNGSPGFGI
DPKTPMEMLYHHVHRLNMAGPFGGAVSGASLTQMPAANVFTTAEGLFSTLPFPVYSNGIH
TTQTLERKED
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atgatcaggatcttcccggatttcagcgttcaggtgacggcggcaggtggaggagccggg
ggaatgccatcaggtcctgcggtggggagaatccccggtaccactaacgggaacccgcag
aacgtccaggggatcacgtcctatcaacaaagggaaattaaaaccctacaccctttctgc
atggagggatcagaggaggaggccatagttgatgcccaattcatgtccaaattcccccac
gacccttactgggagaggcctgctaatgccagctcctgttctgcctctaggcccaagaca
ctccaccttggaggagggcaacaacatacctcatcgccatggttgcaggctctgaggaag
gagaagtcccgggatgcagctcgctcgcggcgggggaaggagaactttgagttctatgag
ctggccaagatgctgcccctgcctggcgccatcaccagccagttggacaaggcttccatc
atccgcctcaccatcagctacctgaagatgagggacttcgccaaccagggggacccgcca
tggaacctgcgcatagaaggcccaccacccaacacctccgtcaaagctataggagtacag
cgaaggaggactcccagtgcagtagcctcagagatcttcgagccacacctcgggagccac
atattgcagtccctggatggatttgtatttgcactaaacaaggagggaaggtttttgtac
atctctgagacggtgtccatatacctgggactttcacaggtggagctgacaggcagcagt
gtgtttgactacgtccaccctggcgaccacgttgagatggcagagcagctgggcatgaag
ctgcctccaggccgaggcctcctctctcagggcactgccacagaggacggcgccagctct
gcctcctcctcctcacacgcagagacccccgagccagttgagtccaccagccccagcctg
ctttccccagacaacactctagagcgctccttcttcatccgtatgaagtccacactgacc
aagagaggtgtccatatcaagtcttcaggctataaggtgatccatgttacaggcaggctg
agaatccggatggcattgacccacagtcggtctgtacccattcagatcatgggcatggtg
gtggtagcccacgccctcccccctcccaccatcaacgaggtgcgcatagactgccaaatg
tttgtcacccgggtcaacatggacctcaacattgtctactgcgagaatagaattagcgac
tacatggacctgacgccagtggacatcgtagggaagaggtgttaccagttcattcacgcg
gaggatgtggagggtatccggcacagccatttagacttgataaacaagggacagtgtgtg
accaagtactaccgctggatccagaagaacggtgggtacatctggatccagtccagtgcc
accatcgccatcaatgccaagaatgccaatgaaaagaacataatctgggtcaactacgta
ctcagtaatccagagtacaaggacacgcccatggacattgcccagctacccaaccttcca
gagaaagcctctgagtcttcagagacgtccgactccgagtccgagtccaaggagaactct
gaagacaacgagaactcgaagtcggacgggaaggggaaccagactgagaacagcgaggac
ccggagacagacagtaaaaagcagcagcagggccagtcgtcctcagagcaggagatgagg
cgtcaggaggagggagacagctcctccaacccagagagccaggagagcgaggacgacctg
gagcccagcgactgcgagctggagaccaaggagaggcgactaggccgactggggggcctg
cacatcaaggtggagcactacggagatagagatggaagagtggagctgcacaactcgccg
tcctcctctgaagaagaggaagatgatgacgatgatgaggaggatgatgatgacgacgac
agcgttaaagactgtgacagggccactgagatgctcgccgtccccgccgccagcaagcag
cagaagcgtaagaagaggaggaaaaagcagaagtgggacggtagtcgttctagacgcctg
cgcctctcctctgccaccaccagccctggcaccatgaaccaccccaccctggggggggac
gcccccctcctgctgcccccctcccctgccagtgcatccgtgctcaagatcaaaacagaa
atgtccgagcccatcaacttcgacaacgacagcagcatctggaactaccctcccaacagg
gagatctccaggaatgagtccccctacagcatgacgaagcacgtcccaacccacgacacc
tttccctccccacagcctggcagtctgcaggtctccatcccagactcagtgctcactccc
ccaggaacagagggaggcggcgggggtggaggaaccaggaagggcgtacccccctccttc
aacggtaacagcagcgccccctcctcagcctccagcgtggccagcctggcccctccctcc
agctctggctcctcctccgaccccctgtccccacccctctcagcctcgccgcgcgacaag
cagcagggtcagggcacccccaccacttccaactcctcctcctccctgctgtacaccagc
gacctggaggccctgcaaaggttgcaggctgggaacgtggtgcttcctctggtccaccgg
gtcaccggcaccctcgccacgaccagcactgccgcctcccgggtgtacaccactggcacc
atccgctatgcccccgccgacgtcaccttggccatgcaggcaggcgccaacctgttgccc
aacaacgttgcccacgctatgaactttgtggatgtcaacggtagccccggcttcggcatc
gaccccaagacgcccatggagatgctgtatcatcacgtccaccggctcaacatggctggc
ccctttggtggtgccgtgtccggcgccagcctcacccagatgccagcagccaatgtattc
accacggcagagggactgttctctactcttccattccctgtctacagtaacgggatacac
accacacaaactctggagcgcaaagaagattag
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