Oncorhynchus nerka (sockeye salmon): 115146044
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Entry
115146044 CDS
T07952
Name
(RefSeq) pinin-like
KO
K13114
pinin
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03013
Nucleocytoplasmic transport
one03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115146044
03015 mRNA surveillance pathway
115146044
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115146044
03041 Spliceosome [BR:
one03041
]
115146044
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
115146044
Spliceosome [BR:
one03041
]
Complex C
Other components
EJC/TREX
115146044
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
115146044
NCBI-ProteinID:
XP_029543665
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All DBs
Position
LG18:complement(23511371..23516604)
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AA seq
693 aa
AA seq
DB search
MAVAVGSLQAQLEKAKESLKNVDDNIRKLTGRDPNELRPGQVRRSTIPGVGGGRGRGINL
LRRGLSDISGGPGGPPVKQRDIEGALLRLAGDQRGRRDSRHDSDAEDDDDVKKPVLQSSV
VATSKERTRRDLIQDQTMDERGKQRNRRMFGLLMGTLQKFKQESNVATDRQKKRIEIEQK
LEVQAEQERKKVEGERRELFEERRAKQTELRLLEQKVELAQLQEEWNVHNTKIVKYIRTK
TKPPIFFLPGRMCSATQKLLDESQKKMNVMFEERREAFAEHLNKMEARPRRQSQRDTALG
KDLKKEDREEGKPTGQVVKVTGNRFDVEMEEEDEATIEEEEGGEGVKRKEDRKKKPLEKV
GEQESKKGGTKADEMEEAEEDNQDTRIVEFRDVGEQMEGTALVREAEGQARDGDQKMEDS
PVEVGNEKGVEEQQPVKAEKEPLHGQDLTAVSDGQEKSIEMQPNEDEEPRTEVATPLLSE
CNPRVEVSDVTSMAPEVQIPLLETGTDPEPLTTEQSQEADQGAIKQTTNAQPAQAQDDAA
APKELAPPSKEASRGRKKSKDKKGGGGRSSSSSSSSSSGSSSSGSSGSSSTGSSSRSSSS
SGSSSSSSSRSRSRGRKDKKRRRRPSERDRERKKAVVERSHKSSKGSGRESKGSKDKSSK
SDRKRTTSEGSRSGKRSSRGDRDRKSDRKEKRR
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggcagtgggatctttgcaagcccagcttgagaaagcgaaagagagtttgaaa
aatgtagacgataatattcgtaaattaactggtcgggatcctaatgaattgagacccggc
caagttagacggtcaaccatcccaggtgttggaggaggtagggggcgaggaatcaacttg
ttgaggcgtggactctccgacatcagcggtggaccaggaggacccccagtgaaacagagg
gatattgaaggggccctcctgaggctggccggtgaccagagagggaggagagattcacgc
catgacagcgacgctgaagatgatgacgatgtcaaaaagccagtgttgcagtcatcagta
gtagctacctccaaggagcgtacacgtcgagacctgatccaggatcagaccatggatgag
aggggaaaacaaaggaatcgacgcatgtttggcctgttgatgggaacattacagaaattc
aagcaggaatctaatgtggcaacggataggcaaaagaaacgcattgagattgaacaaaaa
ttggaagttcaagctgaacaagagcgcaaaaaagtagagggcgaaagacgagagctcttt
gaggagaggcgtgccaagcagacagagctgagactgttggaacagaaagtggagcttgct
cagttgcaagaggagtggaatgtgcacaacacaaaaattgtcaagtacatccgcacaaag
accaagccacccatcttctttctgcctgggaggatgtgctcagccactcagaagctctta
gatgagtctcagaaaaaaatgaatgttatgtttgaggagagacgcgaggcatttgctgaa
catctgaataagatggaggctcggcctcggcgccagtctcagagggacaccgctctgggt
aaggacctgaagaaagaagatcgagaggagggtaagcccacgggtcaggtagtcaaagtg
acaggtaacaggtttgatgtggagatggaggaggaagatgaggcaacaatagaggaggaa
gaggggggtgagggtgtaaaacgtaaggaggacagaaagaaaaagccattagagaaagtc
ggggagcaggagtctaagaagggggggactaaagcagatgagatggaggaggctgaggaa
gacaatcaagacactagaatagtggagtttagagatgtgggggagcagatggagggtact
gcactagtgagggaggctgaagggcaggccagggacggggatcagaagatggaggatagt
ccagtggaggtaggtaatgagaaaggagtagaagagcagcaaccggttaaggcagaaaag
gagccccttcacggtcaggacctcacagctgtgtcagacggccaggagaagagcattgaa
atgcaaccaaacgaagatgaagagccacgtacagaagtggccacacccctgctctcagag
tgcaaccctcgtgtggaagtatctgatgtaacatctatggctcctgaggttcagatcccc
ctactggagacgggaacggatccagagccgctcacaaccgagcagagccaagaggctgat
caaggtgccataaagcagaccactaatgcccagcctgcccaggcccaggatgatgctgcg
gctcccaaggagctggcgcccccgagcaaggaagccagcaggggacgtaagaagtcaaag
gacaagaagggtggtggtggcagaagcagcagtagctcatctagcagctcctccggctcc
tcatccagtgggagctctggctcctcctctactggctcctccagcaggagcagttcctcc
agtggcagctcctccagctcttctagcaggagccgcagccgagggaggaaggacaagaaa
cgtaggaggaggccatccgagagggacagggagaggaagaaggcagtagttgagaggagc
cacaagtcatccaagggcagtggtcgtgaatccaaaggttccaaagataagagctccaag
tctgacaggaagaggaccacctctgaaggcagccggtcagggaagaggtcctctcgtggc
gacagggatcgcaagtcagataggaaggaaaagaggcgttaa
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