Oncorhynchus nerka (sockeye salmon): 115146161
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Entry
115146161 CDS
T07952
Name
(RefSeq) homeobox protein SIX4-like
KO
K15615
homeobox protein SIX4
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115146161
Transcription factors [BR:
one03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain SINE
115146161
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SIX1_SD
Homeodomain
Homeobox_KN
HTH_TSHZ3
Motif
Other DBs
NCBI-GeneID:
115146161
NCBI-ProteinID:
XP_029543913
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Position
LG18:28682526..28691075
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AA seq
681 aa
AA seq
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MSSSSGEVTISNDIQKENVKTDRRECIKLLALDTAELSMERATSNTDAVHSELLVSATSS
LAFSPEQVACVCEALQQGGNVDRLARFLWSLPQSDLLRGNESILKAQALVAFHQARYQEL
YSILENHSFSPSNHSSLQDLWYKARYTEAEKARGRPLGAVDKYRLRRKYPLPRTIWDGEE
TVYCFKERSRNALKDLYKQNRYPSPAEKRNLAKITGLSLTQVSNWFKNRRQRDRNPSEAQ
SKSESDGNHSTEDESSKGQEELSPLPLSNSSDGAMTHGALPLQTGSLDSGLVIKQIGDIK
MPPGSSSGVLFNGNLVTSNPSTVFHNGGSSYLQAPSNILFNGLNLGVQPLAFNPQRLSGG
VLMGGSGVDMQMQAGQEKGLGSSGVDYASYSGCVNGAEVKLEGVHGMAAQNAGSSVLTFS
SSSGTLQLGGYSQVHVHSGISDGNRASLLNSNVGLPPLQLPSGSSPSALSQGTIQVNNVA
VSSSSEDSYHHQHHQDKLAMAPMHPSTVLYSMGNTGQTSIKKEPMEGGGGGGVYSYHHGL
HLDTSGQLSYSSAPLNSEEVPSSQGPTPSSDVTMVSSSSPEPEVYTTLTISTPLMAQTDP
NGHHLQPEYLRGHNPQPVPSSHLLGPGMNNNYMSVSESKVDASGDGVNEMVRVMCGEMEP
GEEKELAKLQTVQMDEDMADL
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcttcttcaggagaagtcacaatttcaaatgacattcagaaggaaaatgtgaag
acggacaggcgagagtgtatcaagcttctggcgctcgataccgcggagttgtctatggag
cgcgcaacttcgaacactgatgcggtccacagtgaacttctggtgagcgcgacttcttcc
ctggcattctccccggagcaagtggcgtgcgtctgcgaggctctgcagcagggaggcaat
gtggaccggctggccaggtttttatggtccttgccacagagtgacctgctacgcggcaac
gaaagcattctgaaagctcaagctctcgtcgcttttcatcaggctcggtaccaggagctc
tacagtattttggagaaccacagcttcagtccgtccaaccactcctcgctgcaagaccta
tggtacaaggcacggtataccgaggcagagaaagcgcgtgggagacccctgggcgccgtg
gataaatatcgcctgcggagaaagtacccactcccccggactatctgggacggggaagag
acagtatactgcttcaaagagaggtctcgcaacgcactgaaggatctctacaagcagaat
agatatccctctccagccgagaaaagaaacctcgctaaaatcacgggactctctttgacg
caggtcagcaactggttcaaaaacaggagacagagggacagaaacccgtccgaagcacaa
tcaaaaagtgaatctgatggcaaccacagcacagaggatgagtctagtaaaggacaggaa
gagctttctccactccccctctccaattcatctgacggggcgatgacccatggggccctc
cccctgcagacagggtctctggacagtgggttggtcatcaaacagattggggacatcaag
atgccccctggatccagcagtggagttctctttaacgggaacctagtgaccagtaacccc
tccactgtcttccataatggtggctcgtcttacctccaggcccccagcaacatcctgttc
aacgggctcaacctgggtgtccagcccctggccttcaacccccagcggctctctgggggg
gtcttgatggggggctctggtgtggacatgcagatgcaggcaggccaggagaaggggctg
ggcagctccggtgtggactacgcctcctactccggctgtgtgaacggggcagaggtgaaa
ctggagggggttcacggcatggcagctcaaaatgccggctcgtccgtcctcacgttcagt
tcgtcctcagggacgctccagctgggcggttacagtcaggtccatgtgcacagcggcata
tctgacggcaacagggcatctctgctcaacagcaatgtaggtcttcctcctctgcagctc
ccctctggctcctccccctcagcactctcacaaggtacaatccaagtgaacaatgtagca
gtcagttcttccagtgaggactcctaccaccaccagcaccatcaggacaagctggccatg
gcccccatgcaccccagcacagtgttatacagcatgggcaacactggacagacctccatc
aagaaggagcccatggagggaggcgggggcggtggggtgtactcctaccatcatggcctt
cacctggacaccagtgggcagctcagttactcctcagcccccctaaactcagaggaggtc
ccctctagccagggccccaccccttcctctgatgtaaccatggtcagctcctccagtcca
gagcctgaggtctacaccaccctcaccatcagcacccctctgatggcccaaacagacccg
aacggacaccacctccagcctgagtacctcaggggccacaacccacaacctgtcccctcc
tcacacctcctgggccctggcatgaacaacaactacatgtctgtgtcagagagtaaggtg
gacgcaagtggcgatggggtgaatgagatggtgcgggtcatgtgtggggagatggagccg
ggggaggagaaggagctggccaaattacagacagtgcagatggacgaggatatggctgac
ctttaa
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