Oncorhynchus nerka (sockeye salmon): 115146165
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Entry
115146165 CDS
T07952
Name
(RefSeq) homeobox protein six1b
KO
K15614
homeobox protein SIX1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115146165
Transcription factors [BR:
one03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain SINE
115146165
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SIX1_SD
Homeobox_KN
Homeodomain
Rrn6_K-rich
HTH_3
YdaS_toxin
HTH_72
Phage_mat-A
Motif
Other DBs
NCBI-GeneID:
115146165
NCBI-ProteinID:
XP_029543917
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Position
LG18:28697107..28701254
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AA seq
284 aa
AA seq
DB search
MSILPSFGFTQEQVACVCEVLQQGGNLERLGRFLWSLPACDHLHKNESVLKAKAVVAFHR
GNFRELYKILESHQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRT
IWDGEETSYCFKEKSRGVLREWYTHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDR
AAEAKERENSENNNSGNNKQNQLSPLDGGKSLMSSSEDEFSPPQSPDQNSVLLLQGNMSH
PGVSSYPMTGLGGAQPVHGMHGHPHQLQDSLLGPLTSSLVDLGS
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatactaccttcgtttgggtttacccaggagcaagtcgcctgcgtctgcgaggtc
ctgcaacaaggaggtaacctggagaggctcggtcgttttctctggtctctcccagcttgt
gaccacctccacaagaatgaaagtgtactgaaagcaaaggcggtggtcgccttccaccga
gggaacttcagagagctatataagatcctggagagccaccagttttccccgcacaaccat
cccaagctgcagcagctgtggctgaaagcgcactacgtggaggcggagaaattgcgcggc
cgaccgcttggagcggtggggaagtatagggtccgcaggaaattccctctgccccgcacg
atctgggacggcgaggagaccagctattgctttaaggagaagtccaggggtgttcttaga
gagtggtacacgcataacccctatccctccccgcgagagaaaagggagctggccgaggcc
acgggactgaccactacgcaggtcagcaactggttcaaaaacagacgccagagagacaga
gccgcagaagctaaagaaagagaaaacagcgaaaacaacaactccggtaacaacaaacag
aaccagctgtctcccctcgatggcggcaagtcgctcatgtccagctcggaagatgagttc
tctccaccacaaagccctgatcagaactctgtgcttttgctccagggaaatatgagtcac
cccggcgtctcctcttaccctatgacgggtctcggtggcgcacagccggtgcatggaatg
cacggacacccgcaccaactccaagactcgttgctgggacctctaacatcgagccttgtg
gatctaggctcctaa
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