Oncorhynchus nerka (sockeye salmon): 115146304
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Entry
115146304 CDS
T07952
Name
(RefSeq) serine/arginine repetitive matrix protein 1-like isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03013
Nucleocytoplasmic transport
one03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115146304
03015 mRNA surveillance pathway
115146304
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115146304
03041 Spliceosome [BR:
one03041
]
115146304
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
115146304
Spliceosome [BR:
one03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
115146304
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
115146304
NCBI-ProteinID:
XP_029544168
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Position
LG18:complement(34370255..34384013)
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AA seq
876 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMTKVNLEVIKPWITQRVTEIL
GFEDDVVIEFIFNQLEEKHPDSKMMQINLTGFLNGKNAREFMRDLWPLLLSAQDNIAGIP
SAFLEQKKEEIKQRQIEQEKLASLKKIDEKENKDNRERESPRRRKSRSQSPRRRSPVKRE
RRRSHSRSPRRKPSPSSSPPPTAPAVTLVSVTFPQSTEEPQPEPDTSESAVPEPVIQEAS
STSDLVKPHTVVVVPDSVMKVKEPSPGKAPKKEERPKPREKEGRRDRPRHRSRSHSRRRP
KSRSRSYSPRRRPSPRRRMSPRRRSPPRRGPPGPRHRRSRSPVRRRRSRSPSSSGSNSSA
PRSPQKAMKRTSTTPPRKQPRGHAADPSLSPSRRRAPNGSPPGKARRSASPRARKGRSSA
SPSRSAGSKKKPGSRNDSLSPVPKPRHSEASESEGATADPVQQRRQYRRQNRETSSDTGS
SSSSEDEGSKRPGGGPAARNGNVRRRRSRSPSSPRRRHRDGSPRKRRSPSPGGRRSPPRR
RRSPSPPPRRRSPSPPPRRRSPSPRRYSPPIQRRYSPTPLGPQKRRLSGSPPPKCLSPMP
KRRPSRSPKRRSPPPQKRRTPPLPTSPPRHRRSPMLPSNRPGRGTRSPPAVHSNRLSPSP
ANRGRALRGSASPQGRFDSSGTSPPGQRRQVSPSHSNRAIRRVSRTPEPRKNQRASQSPQ
PMRRASSRSPSGSPKPGALKRPAPASGFPSSGCSASGSPSAPLAKKASSGSGSPSPNKNS
DTEAGGKKNKKHKKEKKHKKDKKHKKHKKHKKEKSGVLVAAGDGQENLGMEEDVDSDLKK
ESDSEVEERLDDLEKHLREKALRSMRKAGKLSPPLS
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgggattcttccgcggcacaagtgcagaacaggacaatcgcttcagcaacaag
cagaagaaacttctaaagcaactgaaatttgcagaatgtctggaaaagaaggtggatatg
accaaggtgaacctggaagtcatcaaaccttggatcactcagcgagtgacggagatcctg
gggttcgaggatgatgtcgtcatagaattcatatttaaccagctagaagaaaagcacccg
gacagtaagatgatgcagatcaacctgaccggcttcctgaatgggaagaatgccagagag
tttatgagggacctgtggcctctgctgctcagtgcccaggacaacattgccggtatcccc
tctgccttcctggaacagaagaaagaggagatcaaacagagacagattgagcaggagaag
cttgcctctctgaagaagattgatgagaaggaaaacaaagataacagagaaagggagagc
cccagaaggaggaagtcaaggtcacagtctccacggcgacggtctccagtgaagagggag
agaaggcggagtcactcccgctccccgaggcgtaagcccagtcccagcagctcccctcca
ccaacagccccagccgtcaccctggtcagtgttacatttccccagagcactgaggagccc
cagccagagccagacacctctgagagcgccgtacctgagccagtcattcaggaggcctct
tccaccagtgatttggtgaagccgcacactgtggttgtggtacctgactctgtgatgaag
gtcaaagaaccctccccaggtaaggctcctaaaaaggaggagaggcccaagcccagggag
aaggagggcaggagggacaggccccgccaccgctctcgctcccattcccgcagacgacct
aaatcgcggtccagatcttactccccacgccggaggccgagccccaggagacggatgtcc
cctcgtcgtaggagcccccccagacgtggccccccaggccccagacacaggcgcagtcgc
tcccctgtccgcaggcggcgctctcgctccccatcatcctctgggagcaactcttccgcg
cctcgctcacctcagaaggccatgaagagaacgtcaaccacacctcctaggaaacagccc
cgcggccacgcagctgatccctccctcagcccctccaggagaagagcccccaatggtagc
ccacctgggaaggcccgacgctctgcctcccctcgggctagaaagggccggtcctcagcc
tccccgtccagatcagctggttcaaagaagaaaccaggatcaaggaatgattcactgtct
cctgttccaaaacccaggcattctgaggcatcggaatcagagggggctaccgcagatcct
gtgcagcagcgacgtcagtaccgcaggcagaatcgggagacgtcttcagatactggatca
tcctcctcatcagaggacgaggggtccaagaggccgggcggagggccagcggcgaggaac
gggaatgtcaggaggcggcgcagtcgctccccctcctcccccaggagacgacacagggac
ggctcccccagaaaaagacgctccccctctcctggaggacgccgatctcccccacgccgt
cgcagatctccctctcctcctccgagacgcaggtctccctctccacctcctcgcagacgc
tccccctcccccagacggtactctccccccatccagcggcgctacagccctactcccctg
ggcccacagaagagaaggctatcggggtctccccctcccaaatgcctttccccgatgccc
aagcgccgtccctcccgttccccgaagcgcaggagtccccctccccaaaagagacgcaca
cctcccctccccacctctcccccccgacacaggaggagccccatgctcccatccaaccgg
ccaggccggggcacgcgctccccccctgctgttcacagtaaccgcctctccccctcccct
gccaaccgtggtcgggccttgcgtgggtctgctagtcctcaggggcgctttgactcctcg
ggcacctctccacctggccagaggcgccaggtgtccccctcacacagcaacagggcaatc
cgcagggtgtcccggacaccagagccccgcaagaaccagagagcctctcaaagcccccag
cctatgaggagagcgtcatcaaggtcaccgtctggttctcctaaaccaggagccttgaag
cggccggccccagcctcaggcttcccctcatcgggctgctcggccagtggctcgccatca
gcccctctggccaagaaggccagcagcggctctggcagcccttctccaaacaagaattca
gacactgaggctggaggaaagaagaacaaaaaacataagaaggagaagaaacataagaag
gacaagaagcacaagaaacacaagaaacacaagaaagagaagagtggagtgctggtggct
gctggggatggccaggagaacctggggatggaagaggatgtagactccgaccttaaaaag
gaatcagacagtgaagtagaagagcgtctggacgacctggagaagcacctgcgagagaag
gcactgcgttccatgaggaaagctggaaagctgtccccgccactgtcttga
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