Oncorhynchus nerka (sockeye salmon): 115146329 Help Entry 115146329         CDS       T07952                                  Name (RefSeq) protein SCAF8-like isoform X1   KO K13191   RNA-binding protein 16 Organism one  Oncorhynchus nerka (sockeye salmon) Brite KEGG Orthology (KO) [BR:one00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:one03021]     115146329    03041 Spliceosome [BR:one03041]     115146329 Transcription machinery [BR:one03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      115146329 Spliceosome [BR:one03041]  Other splicing related proteins   Spliceosome associated proteins (SAPs)    RNA binding proteins (RBPs)     115146329 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  CID RRM_1 CDC45 DUF3525 Motif Other DBs NCBI-GeneID:  115146329 NCBI-ProteinID:  XP_029544204 LinkDB All DBs Position LG18:35492891..35533757 Genome browser AA seq 1486 aa AA seqDB search MEAVKAFNDELYSLNEYKPPISKAKMTNITKSAIKAIKYYKHVVQSVEKFVQKCKQEYKV PGLYVMDSIVRQSRHQFGQDKDVFAPRFSKNIIGTFQHLYRCPSDDKSKIVRVLNLWQKN AVFKSDIIQPLLDMAAGLPPPSVTPVMTSRDAPVNNATPGTPATPATPANIVSSLPDWAS QFSNTDTVAAVAQILQSPQGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQL TAAASANPMHLNPLDQRVSSFNKKMLGHFDFGNDSERSEESKKDSQSSQMPMVSDSIFHQ LAEQLQQQNLEQLQKQLMEHQQKDGIFGSENTHQQSSSQSQHPEPGNKIDDSIENQQQDM DMDLDDGPEMDEEIFEPEDKKSKTIDIQSRTRSRSRSRSPRKRRSRSRSGSRKRKHRKRS RSRSRERKRKLSRSYSSERHARELEKERQKKGLPPIRSKFLSVCSTTLWVGQVDKKATPQ DLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYQARQKLSTGSHKIVSKVIKIAWALN KGVKQEYKQLWDMDLGVTYIPWEKVKLDDLDGFAEGGMIDQETVNAEWEAAKNAPEPVKE AVSQAVSAEPMAVTNSQQTQQKAFIQQVSMIPVQLPVAQAVPAGGLVPPSFPVSMTMPPP GYGPPPTFLRAGFNASQPPPGFMQAAGVPQQAGMGSAPISLVQPSMSQAQDSMKDSPYRA TVPGSFMPSAIPGQGVFNPLQPGVQTQQGANDKMGQSADGMDAAAELVLQGMQNAMSRRM GLLGMHPSASLTHPLQQQGPPGQRMPGLMPLDLRPSMLQGAGARFPLLMQQGLSQQSILD ASLHAQARARAASQMDHFNRAEGAFNRGPNPPNENMSKAEDQPSSRADESQQGRDQDYRF PPPQEKQSTGLLRTPPPEHRESMGGRGGGAGGGGAGGGGMGGGGRPALLQTPVREPARDS VVGRLQALAGFTPQTQSRWGPPRGDFDERDMRGSPAGVSKGFQEERPGSNQGQNFPNRFE NQNRAGAGGVGAGGGGVGGGPAWSRGGAAAPFADADMPQDLDERRRAWDRQQRERDDREF DLRKEMNGNRRERDSREKDRERERERDRERERDHGRERGNREREQECDREREREKEREKD RERERERDRNKRGAWTPLLPLPQPLLPTPALTPTLSLTQGKSQALLQLQSRLQPKPGFLT KPGLLQTPILLTRSTSQAPTKFLQAPSQSPTQAKNEALPRPEPQTESQSSTQTHASPKSE SSPQTQSSPQNQSSPQNLVSPQAQLPSPPQAQSPPCAQLPPQALSPPRAQMPPQALSPPP AQSPPQALSPPPAQSPPQALSLPPAQSPPQALSPPPAQLPPQAPSPHQEITDTQEEPEKL QEEPEPIEEPPSQLVYGTGLRMDTDVVAEPTPERAPTPTLSPTPAPLSMSPVLTHRSEEP QCLPEPLDVQQPPQHASSSPKDNGLSEPMEEAEKQPVVEQTDTEGT NT seq 4461 nt NT seq  +upstreamnt  +downstreamnt atggaggcagtcaaagcattcaacgacgagctctactctctgaatgagtacaagcctccg atctccaaggccaagatgaccaatattaccaagtctgcaataaaagctataaaatactac aaacatgttgtccagagcgtggagaagttcgttcagaaatgcaagcaagagtacaaggtc ccaggcctgtacgtcatggactccatcgtgcggcagtcacgacaccagtttggccaggac aaggatgtgttcgccccgcgcttcagcaaaaacataatcggaaccttccagcacctctac cgctgcccctcagatgacaagagtaagattgtcagagtcctcaacctgtggcagaagaac gccgtcttcaagagtgacatcatccagccgctgctggacatggctgcaggactaccccct cccagtgtcacccctgtcatgaccagcagggatgctccggtcaacaacgctacgcctggt accccagcgaccccggccactccagccaacattgtgtccagtctgcctgactgggcgtct cagttttccaacacagacactgtagctgctgtggcccagatcctgcagagtccacaggga caacagctccagcagctggtgcagagtctgcagatgcagcagcagaagccccagccgtct ctgctgcaggcgctggatgcaggcctggtggtccagctacaggccctgacagcccagctc actgctgccgcctcagccaaccccatgcacctcaaccccctggaccagagggtttcctcc ttcaacaagaaaatgttgggtcattttgactttgggaatgattcagaacgctctgaagaa tccaaaaaggactcgcaatcatcccagatgcccatggtgtctgactccatcttccaccag ctggcagagcagctgcagcagcagaacctagagcagttacagaagcagctcatggagcac cagcagaaggatggaatctttgggtctgagaacacacaccagcagagcagcagccaatca cagcacccggagccaggcaacaagattgatgactccattgaaaaccagcagcaggacatg gacatggacctggatgacgggccagagatggacgaagagatcttcgagccagaggacaag aagtccaagacgattgacatacagtcaagaacacggtccaggtcacgatcgagatctccc aggaagagacggtccagatcacggtcaggctctcggaaacggaaacatcgcaagcgatcg cggtcacgctccagagaacggaagaggaagttgtcgcggtcctactccagcgagagacat gcccgcgagctagagaaagagcgtcagaagaaaggactgcctccaatccgatccaagttt ctcagtgtgtgcagcaccactctgtgggtgggacaggtagacaagaaggccactccgcag gacctcaccaatctgtttgaagagtttggtcagattgagtctatcaatatgatccctccc cgtggctgtgcctacatctgtatggtccacagacaggatgcctaccaagccagacagaaa ctcagcactggttcacacaagatcgtctccaaggtcattaagatcgcttgggcgctgaat aagggagtgaagcaggagtataagcagttgtgggacatggacctgggggtcacctacatc ccctgggagaaggtcaagctggacgacctggacggcttcgctgagggaggcatgatcgac caggagactgtcaacgccgagtgggaagcagccaaaaatgcaccagagccagtgaaggaa gcggtgagccaggctgttagcgctgaacccatggcagttactaattcccaacagacccaa caaaaggccttcatccaacaagtctccatgatacctgtgcagctccctgtggcccaggct gtccctgctgggggtcttgtgcctccatccttccctgtttccatgacaatgcccccacca ggctatggccccccgcccaccttcctcagagcagggttcaacgcctcccagcctcctcca ggtttcatgcaggcagcaggtgttcctcagcaagcaggcatgggctcagctcctatatct ctggtgcagccctccatgtcgcaggctcaggacagcatgaaggactccccgtacagagcc actgtcccaggaagcttcatgccctctgccatccctggacaaggggtcttcaacccgctt caacctggagtccaaacgcagcaaggagccaatgacaagatgggccaatctgctgatggc atggacgctgctgcagagttagtactgcaaggtatgcaaaatgcaatgagtcgtcgtatg ggtcttctggggatgcacccctcagcctccctcacccaccccctacaacagcagggcccg cctggccagaggatgcctgggctaatgccgctggacctccggcctagtatgctccaggga gccggggcccgcttccccctcctgatgcagcagggcctgtctcaacagagtatcctggat gcctccctccatgcacaggcccgcgccagagcggcctcccagatggaccacttcaacagg gctgaaggggccttcaaccggggtcccaaccccccaaatgaaaacatgtctaaggctgaa gaccagccttcctctcgggcagacgagagccagcaggggagggaccaagactaccgcttc cccccgccccaggagaagcagagcacaggcctgctgaggacacctcccccggagcacaga gagtccatgggtggacgtggtgggggagctggtggtggaggtgctggtggtgggggtatg ggcggaggaggcagacctgccctgctgcagaccccagtgagggagccagctagagacagc gtggtagggcggcttcaggccctcgccggcttcaccccccagacccagagtcgctggggg ccacctagaggggactttgatgagcgtgacatgcggggctcaccagccggggtctccaag ggcttccaggaggagcgccctggctccaaccaggggcagaactttcccaaccgctttgag aaccagaaccgcgctggggcaggaggagtaggtgctggtggcgggggtgttggagggggc ccggcgtggagtcgtggtggagctgcagccccgttcgctgatgctgacatgccacaggac ttggatgagcgccggcgcgcttgggacaggcagcaacgggagagggacgacagggaattt gacttaaggaaggagatgaacggcaaccgccgtgagagagatagccgcgagaaagaccgg gagagggagagagagagggaccgggagagagaaagggaccatggccgtgagcgtggcaac cgtgaacgagagcaggagtgcgaccgggagagagagcgtgaaaaggagagggagaaggat cgggagagagaacgtgagcgggaccgtaacaagcgtggagcctggacacctcttctccct ctaccacaacccctacttcctactcctgccctgaccccaaccctctccctgacccaaggc aaatctcaggccctgctgcaactacagtccaggcttcaacctaaacctggattcctaact aaaccgggtctgcttcaaactccaatcctcctaactcggtcaacatctcaagccccaacc aagtttcttcaagccccatcccagtctccaactcaagccaagaatgaagccctccccagg cctgagccccagacagagtcccagtcctctacccagacccatgcttcccctaagtctgag tcctcaccccagacccaatcctctcctcagaaccagtcatcaccccaaaacctggtttcc cctcaggcccaattgccgtcccctccccaggcccagtctccgccatgcgcacagctccca ccacaggccctgtccccaccacgggctcaaatgccaccacaggccctgtccccaccaccg gcacagtcgcctccccaggccctgtccccaccaccggcacagtcgcctccccaggccctg tccctaccacctgcacagtcgcccccccaggccctgtccccaccaccggcacagttgcca ccccaggccccgtcgccacaccaggagatcactgacacccaggaagagccagagaaactc caggaagaacctgaacccatagaggaacctccatctcagttggtctatgggacggggttg aggatggacactgacgtagtggctgagcccacacctgaacgggctcccacccctaccctc tcccccactccagccccactctcaatgtcacctgtcctcacacaccgctctgaggaaccc caatgcctgccggaacccctggacgtgcagcaaccaccacagcatgcctcctcctcccct aaggacaatggactgagtgagccgatggaggaagctgagaaacagccagtggtagagcaa actgacactgaggggacataa

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