Oncorhynchus nerka (sockeye salmon): 115146379
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Entry
115146379 CDS
T07952
Name
(RefSeq) homeobox-containing protein 1-like isoform X1
KO
K24885
homeobox-containing protein 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115146379
Transcription factors [BR:
one03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
115146379
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HNF-1_N
Homeodomain
Homeobox_KN
HTH_3
HTH_31
HTH_37
CUT
Motif
Other DBs
NCBI-GeneID:
115146379
NCBI-ProteinID:
XP_029544276
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Position
LG18:38050271..38087278
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AA seq
546 aa
AA seq
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MSRYTDEPRFTIEQIDLLQRLRRTGMTKPELLHALDILERLDHQHGHKFGRRPQPAYQGP
TPNYNTNSTSSSASSSTSTTATQTGYLENGSGSGGNGLSPSPSNNYDMSPPPPAVVSDPV
AMAVVAQNGHGVGGGDELVAVTNGKLSPPRFPDSVGAVSGGVTGSGYGFETSEEELDVDD
KVEELLRRDSAIIKEEIKAFLGNRRISQAVVAQVTGISQSRISHWLLQQGSDLSEQKKRA
FYRWYQLEKTTPGATLTMRPAPMALEDVVELRQTPPPISSTPGSFRLRRGSRFTWRKECL
SVMESYFNENQYPDEAKREEISNACNAVIQKPGKKLSDLEKVTSLKVYNWFANRRKEIKR
RANIEAAILESHGIEVQSPGGHSNSDEIDGNDFSDQGCEGPLFEKRAVTRPFSLSRRDLS
SPTQVPTLLPSWLAAWPGSGRGGLAVQRASSLICRSLLSGASLAQGAGTEGSRLTGVSWS
APSPPSLQDNSSTNHSNALEHQDPITLAVEMAAVNHSILALATQAGGGLALGGTGSDIKT
EVVEPN
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggtatactgacgagcctcgtttcaccattgagcagattgacctgctccagcgg
ctgaggaggacagggatgaccaagccagagctcctccacgccctggacatcctggaaaga
ctggatcaccagcacggacacaagttcggacgccgtccccagcccgcctatcagggaccg
acgcccaattacaacactaattcaacatcttcttcggcatcctcatcaacgtccacgacc
gccacacagactggttacctggagaatgggagtggaagtggcgggaatggcctgtcgccg
tcgcctagcaacaactatgatatgtcaccgccccctccggcggttgtatccgacccggtt
gctatggcagtggtggcgcagaacgggcatggggttggtggcggcgatgagctggttgcc
gtgacgaacggaaagttgtctccaccacggtttcctgacagtgtaggcgcggtgagtggc
ggcgtgacggggagcggctacgggtttgagaccagcgaggaggaactagacgtggacgac
aaagttgaggaactcctgagaagggacagtgccataatcaaggaggagatcaaggcattc
ctggggaacaggcgcatctctcaggcagtggtggctcaggtcacaggtatcagtcagagt
cgtatctcccattggctgctgcagcagggctcggaccttagcgaacagaagaagagggcc
ttctaccgctggtaccagctggagaagaccacccctggtgcaactctgacgatgcgacca
gcccccatggctctggaggacgtggtggagttgcggcagactccgccccctataagctcc
acccccgggagcttccgtctgcgcagaggcagtcgctttacctggaggaaagaatgtctg
tctgtgatggagagttacttcaatgagaaccagtaccctgatgaagctaaaagagaggag
atctctaacgcctgcaacgctgtcatccagaagccagggaagaagctgtctgatctggag
aaggtcacgtctctgaaggtctacaactggttcgccaaccgccgcaaagagatcaagaga
cgtgccaacatagaagcagcaatcctggagagccatgggattgaagtccagagccctgga
ggacactccaacagcgacgaaatcgacgggaatgacttctctgaccagggctgtgagggt
cctctgtttgagaagagagctgtgaccagacctttcagtctcagtcgacgagacctgtcc
tctcccacacaggttcccaccctgctgccaagctggctggcggcttggcccggctcgggc
agggggggcttggccgtccagagggccagctctctgatttgccgatccttgctctcggga
gcgagtctcgctcagggggcagggacggagggttccagactgacgggtgtgtcctggtct
gccccctcccccccctccctccaggacaactcctccaccaatcacagcaatgccctggag
caccaggatcccatcactctcgcagtggagatggcggccgtcaatcatagcatcctcgcc
ctggccacgcaggcggggggaggattggccctgggcgggacaggcagtgacatcaagacc
gaggtggtggagcccaactag
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