Oncorhynchus nerka (sockeye salmon): 115146825
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Entry
115146825 CDS
T07952
Name
(RefSeq) collagen alpha-1(XXIII) chain-like isoform X1
KO
K24355
collagen type XXIII alpha
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
one00536
]
115146825
Glycosaminoglycan binding proteins [BR:
one00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115146825
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
115146825
NCBI-ProteinID:
XP_029544702
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All DBs
Position
LG19:30798646..30832948
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AA seq
437 aa
AA seq
DB search
MGRRGDSGSPGTAGRDGYPGPLGMDGKPGGPGPMGSQGLSGPKGEKGDQGDMGPRGLPAL
AGSAGLLSNQILTVKGDQGQAGPPGPPGPPGSPGPRGPPGNTGKDGPRGPPGEQGPPGRD
GIDGLDGLMGPPGQKGEDGQQGVPGSQGSPGLKGEQGPAGDQGRTGLDGLPGMKGLPGEK
AVPGSYDNIGLGQVVQGPPGPPGPPGGQGSKGDSGSPGAPGADGDKGAKGDRGDDGMPGV
AGEKGERGLMGQTGLAGADGKKGERGDSRFEDSLAQRISIPGPPGPPGPQGFMGLDGRPG
PKGEPGEGVKGDKGDAGDKGPPGLRGTQGLPGSTGLVGLPGTKGGKGEQGLPGLDGFPGL
MGQKGERGGRGDKGDRGMLGKKGLKGQKGEQGPPGLDQPCPVGTNGGGEHPGEAGQPSGA
PCPLGRDGLPIPGCWHK
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgggaagacgaggcgactctggatctccaggcacggctggacgggatggttacccgggc
ccacttgggatggatgggaagcctggtggtcctggtcctatgggaagccagggactgtct
gggccaaaaggagaaaagggagaccaaggagatatggggcccaggggactccctgcactt
gcgggctctgcaggtctgctcagtaatcagattctcacggtcaagggtgaccagggtcag
gctggcccccctggacccccagggccccctggatcaccagggcccagaggaccccctggg
aacacagggaaggatgggcccagaggaccccctggagagcagggtccacctggtcgagat
ggaatcgatggattagatggactgatgggtcctcctggacagaagggtgaggatggacag
cagggcgtgcctggatcacaggggtctccggggctaaagggggagcaggggcctgctggt
gaccagggcaggactggccttgatggactaccagggatgaagggcttaccaggagagaag
gctgttcctggctcctatgacaacatcggccttggccaagtcgttcagggtcccccaggg
ccaccagggcccccaggaggccaagggtcaaagggagactcaggctcacctggtgcacct
ggagctgatggggataagggagccaaaggggatagaggtgatgatgggatgcctggagtg
gcaggggagaagggagagcgaggcctgatgggccaaactgggcttgcgggagctgacggt
aaaaagggagagcgaggggattcaaggtttgaggacagtctggcccagaggatctctatc
ccaggccctccagggcctcccgggccccagggtttcatgggacttgatggaaggcctggc
cccaagggggaaccaggtgagggagtgaaaggagataagggagatgcaggcgacaaaggt
cctcctgggttaaggggtacccagggtcttccaggttctacagggctggttggtctccct
ggcaccaaaggaggaaagggagagcaaggattgccgggattagatggtttccccgggctg
atgggacaaaagggggagagggggggcagaggagacaagggtgacagggggatgctggga
aagaagggactgaagggacagaagggcgaacaaggccctcctggactggaccagccctgt
cctgtgggcaccaatgggggtggagaacaccctggggaggcggggcaaccctcaggcgcc
ccttgccccctgggtcgggatgggttacccatacctgggtgttggcataagtga
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