Oncorhynchus nerka (sockeye salmon): 115146915
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Entry
115146915 CDS
T07952
Name
(RefSeq) retinoic acid receptor RXR-alpha-B-like
KO
K08524
retinoid X receptor alpha
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03320
PPAR signaling pathway
one04148
Efferocytosis
one04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
115146915
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
115146915
03320 PPAR signaling pathway
115146915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115146915
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
one03310
]
115146915
Transcription factors [BR:
one03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
115146915
Nuclear receptors [BR:
one03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
115146915
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
Nuc_recep-AF1
DUF5558
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
115146915
NCBI-ProteinID:
XP_029544783
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Position
LG19:21319396..21470191
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AA seq
484 aa
AA seq
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METKPFMSLESTILPMGWFLKPQCSLAPPPQRGRSGEACSCFTGMCHLHHPRISTGNTQR
HLHIPSPSSPSWQTPHLGRHLYQINSSGQVTSSPLSSPTSHRGMHPSLLNPSSMGPSGSL
HSPISTLSSPMNGLGSPFSVINSPMGPHSMSSPGMGYGPSVSPQLNSQMNSVSSSEDIKP
PLGLNGVMKVPAQPSPGCMPLSLTKHICAICGDRSSGPEPVLLHTAVQEERQRAKERSEN
EVESTSGVNEDMPVEKVLEAELAVEPKTETYTETNLGMPSNSPNDPVTNICQAADKQLFT
LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAH
SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYA
SLEAYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAP
HQMT
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccaaacctttcatgtcattggaatctacaatcctgcctatgggatggttccta
aagccccagtgctcgctggctccgcccccccagcgaggacgctcgggggaggcctgctcc
tgtttcaccggcatgtgtcacctccaccacccccggatatctacaggtaacactcaacgc
catctccacatcccctcgccatcttccccgtcatggcagactccgcacctgggaagacac
ctgtatcaaataaattcatcaggtcaggtgacctcatctccactgagctctcccacgtcc
catcggggcatgcacccatccctgctcaacccgtcctccatggggccctcaggctccttg
cactctcccatcagcaccctgagttctcccatgaacggcctgggctcgcccttttctgtc
atcaactcccccatgggcccacactccatgtcctcgcccggcatgggctacggccccagt
gtcagcccccagctgaactcccagatgaactccgtcagcagctcggaggacatcaaaccc
ccgctgggtctcaacggggtgatgaaggtgcccgcccagccttcgccggggtgcatgcct
ctctccctcaccaaacacatctgtgccatctgcggagaccgctcctcaggaccggaacca
gttttgttacacacagccgtccaggaggagcgccagcgggccaaagagcgcagcgagaac
gaggtggagtccaccagcggcgtcaacgaggacatgcccgtggagaaggtcctggaggcc
gagctcgctgtggaacccaagaccgagacctacaccgagaccaacctgggcatgccatcc
aactcgcccaacgacccggtgactaacatctgccaagcagccgacaagcagctctttaca
ctggtggagtgggccaagaggatcccccacttctctgagctgcccctggacgaccaggtc
atcctcctacgagcagggtggaatgagctcctcatcgcatccttctcacaccgttcgata
gcggtgaaagatgggatcctcctggcaacagggctacacgtccatcgtaacagcgcccac
agtgctggagtgggagccatctttgacagagtgctcacagaactggtgtccaagatgaga
gacatgcagatggataagacagagctggggtgccttcgagccattgtcctcttcaaccca
gattctaaaggcttgtcaaacccaggcgaggtggaggctttgagagagaaggtctacgcc
tctctggaggcctactgcaaacagaaatacccggatcagcctggcaggtttgccaagctg
ttgctgcggttaccagccctgcgttccattggtctgaagtgtctggagcacctgttcttt
ttcaagctcatcggggacacgcccatcgacaccttcctcatggagatgctagaggcgccc
caccaaatgacataa
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