Oncorhynchus nerka (sockeye salmon): 115147041
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Entry
115147041 CDS
T07952
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115147041
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115147041
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115147041
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
115147041
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
115147041
NCBI-ProteinID:
XP_029544895
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All DBs
Position
LG3:664937..675573
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AA seq
957 aa
AA seq
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MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKVIETQMERFKVVERETKTKAYSKEGLGLALKVDPAQRE
KEETGNWLTNTIDTLNMQVDQFESEVESLFIQTRKKKGEKEKQDRIEELKRFIERHRYHI
RMLETILRMLDNDSVQVDSIQKIKDDVEYYMESSQDPDFEENEFIYDDLDLEDIRESPMD
SQELDDESWDDHDDDAHAISSAALVATSPTGLGNIEDEMFLHSSSTPTSTTSSSPIPPSP
ATCTAENSEDDKKRGRSTDRDVSQSPAKNGTSSLLLSFSSSANSGSSSSSSSLVSMAAVV
GGNPGVPTSNSLIGSFSSAVQQHQPQPPQQPVLQPLQQPQQPQTKPCTPSPPSHPLLSTA
PSLPTPISASQNSLPQVSPGHILNSSLGLGLGLGKVGMTGTSSANSMSGLGLTGMSASLN
TMAGLLSGSTHAPYAQAASLGGLGLSTTTQSSVSVESSSIPTSCSSGVTTNGAGTGLGLL
GSSPAHGSLTGGILGLVPGQSVIPGPPLIPLSPVCAAPGGAVGMMGGNGGSMGPIGGVVG
SNAAPARPPSGLKQNGSTSYSAVVAESTAESAFSTPSQSQSSQPSSLTSSASQPMDNGPS
LISSITLPPSSPSPSFSDSIPGGGSLLNGPHSYTQASEGLKLPTDLRQILMETRMSAQAP
EPPGAMATATNTRKRKQCQAPEPLSSLKAMAERAALGSGLDGEIPNLHLTDRDIFSGSSA
APGTPAAPQPSLSEVSIPPSLGVCPLGPTPLSKDQVYQQTMQESAWTHMPHPSDSERIRQ
YLMRNPCPTLPFHHQMPPHHSDSIEFYQRLSTETLFFIFYYLEGTKAQYLSAKALKKQSW
RFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atggctgataagagaaaactccaaggtgaaattgacagatgtttgaaaaaggtagctgaa
ggcgtagaacagtttgaagacatttggcagaagcttcacaatgcagccaatgccaaccaa
aaggaaaaatatgaggcagaccttaaaaaagagattaaaaagctacagcgattgagggat
caaataaaaacatgggtggcatcaaatgagatcaaagacaaaaggcagctagtggagaat
cgcaaggtcatagagacgcaaatggagcggtttaaggtggtagagcgggagacaaagacg
aaggcctactctaaagaaggcctggggctcgccctgaaagtggacccagctcagagggag
aaagaagagacgggaaactggctaacgaatacgatagacactctaaatatgcaggtggac
cagtttgagagtgaggtggaatccctcttcattcaaaccaggaagaagaaaggagagaaa
gagaagcaggatcgcattgaggagctaaagaggtttatagaaaggcataggtaccacatt
cgcatgctggagaccatcctgcgcatgctagacaacgactcggtgcaggtggactccatc
cagaagatcaaggacgacgtggagtactacatggagtcgtcacaggacccagactttgag
gagaacgagttcatttacgacgacctggatctggaggacatccgtgagtcgcccatggac
agccaggagctcgatgacgagtcctgggatgatcatgatgatgatgctcatgctatcagc
tctgcagcgctggtggccacctctccaacgggcttggggaacatagaggatgagatgttc
ctccactcgagcagcactcccacctccaccacctcctcttcccccatccctccatccccg
gccacctgcactgctgagaactctgaggacgataagaagagagggcggtcgacagacagg
gacgttagtcagtctcctgcgaagaacggcacttcctccttgttgttgtccttttcctcg
tccgccaattccgggtcctcttcttcttcctcctctcttgtctccatggccgccgttgtc
ggaggcaaccctggggttcccacaagcaacagtctaataggaagcttcagcagcgccgta
caacaacatcagcctcaacctccacagcaaccagtcctgcagccactgcaacaaccacaa
caaccccaaacaaaaccttgcacccccagcccacccagccacccccttctctccaccgcc
ccctctctccccacacccatctcagcctcccaaaactccctgccccaggtctcgcctggt
catatcctcaactccagcctaggccttgggttgggcctgggtaaagttggcatgacgggg
acaagcagtgccaactcaatgtctggtctgggcctgactgggatgtctgcctctctgaac
accatggcaggcctgctctctgggtccacccatgccccttacgcccaggcagcctcgttg
ggaggcctgggtctgagtaccactacccagtccagtgtctcagtggagagctcctccatc
cccacctcttgctccagtggagtgaccaccaacggggctgggacaggcctgggcctgctg
gggtccagcccagcacacggctccctgactggggggatcctgggcctggtgcctgggcag
agtgtgatccctgggccccctctgatccctctcagcccggtctgtgctgcccctgggggg
gcagtggggatgatgggaggaaacggaggaagcatggggccaatcggaggagtagttggg
tcgaacgcagcccctgccagaccgcccagtggcctgaagcagaacggaagcacaagttac
agtgctgtggtggcagagagcacagcagagtccgccttcagcacacccagccaatcacag
agcagccagccttcctcgctgacctcctcagccagtcagcctatggacaacggtcccagc
ctcatcagctccatcaccttgccccccagctctccgtccccctcgttttccgacagtatc
cccggtggagggagtctcctcaacggaccccactcctacacacaggcctctgagggcctc
aagcttcctacagacctccgtcagatactgatggagaccagaatgtcagcgcaggcccca
gaaccgccaggggccatggctacagccactaacacacgaaagagaaagcagtgtcaggcc
ccggagcctctgagttctctgaaggcgatggctgagagagcagcattaggatcaggtcta
gatggagagatccccaacctgcacctcacagacagagacatcttctctggttcgtcggct
gcccccggcacgcccgcggccccccagccctccctgtcggaggtgagcatccccccttcc
ctgggggtgtgtcccctgggtcccactccgctctccaaggaccaggtgtaccagcagacc
atgcaggagtctgcttggacacacatgccgcacccctcagactccgagaggatcaggcaa
tacttgatgaggaacccatgccccaccctgccattccatcatcagatgcccccccaccac
tcagactctatagagttctaccagagactgtccacagagactctcttcttcatcttctac
tacctggagggcactaaagctcagtacctgtcagccaaggctctgaagaagcagtcgtgg
aggttccacaccaagtacatgatgtggttccagaggcacgaagaacccaagactatcact
gatgagtttgaacagggcacttacatctactttgactatgagaagtggggtcagaggaag
aaggaggggttcacctttgagtacaggtacctggaagaccgagacctgcagtga
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