Oncorhynchus nerka (sockeye salmon): 115147057
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Entry
115147057 CDS
T07952
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115147057
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115147057
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
115147057
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
TSX
HNH_repeat
Motif
Other DBs
NCBI-GeneID:
115147057
NCBI-ProteinID:
XP_029544906
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Position
LG19:complement(28442134..28455701)
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AA seq
535 aa
AA seq
DB search
MATELTISESAVPLSEPHQVEDEEHWLYGGENTKKQNASEGLPGPGDSLQLTSMGNTLQL
TSMGNTEEKDAASQEAKGTEGEEEEDSDSDDEDDVKVTIGNIKTGAPSYMGTGMNLSLKP
ARCYASAAAIKLQPKGIDIETLGAFNGAPVVEVEMDIFEDKPWRKPGADLSDYFNYGFNE
ETWKGYCERQRRLQLGLEPSAPLSFENKITVQQGRATTLEKDTEPSSIKPDYKPDFPPAS
VLALAANRLKAGPPPNRKLGGTIDVIGGQTGAIRRVEGRRREMQEQNPIQVLGDHGNKVQ
PLVPPAGPPLPLPMGMPPPHFLHPPPPVSGMPPPLHPPGMPPPSITGLFLPPLAPPPTLM
MPPVDSSRAPLPFGYNSGESSFISYPPVSSSHMPWGSVMEKGGEDRGRGHWEYQGSHRER
DRDQERGHTPTTSEYNEDDRYHYYSHDRESEREFEHSYLHVHDSSGGRSREREEHQRDRR
HRDKEESGKHKSSKRKQHDDEGEGHRRHKHKKSKRSKEDKDVPEDMLGRGEEHKD
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggctactgagttgaccatttcagaatcagcagtcccgttgagtgagccccatcaggtt
gaagacgaagagcattggctgtatgggggggaaaacaccaagaaacaaaatgcctccgag
ggtttgcctgggcctggtgactcccttcagctgacttcaatgggcaatacccttcagctg
acttcaatgggcaataccgaagagaaggatgctgcatcacaggaagccaagggtactgaa
ggtgaagaggaggaggacagtgacagtgatgacgaggatgacgtcaaggtcaccattggt
aacatcaaaactggtgcaccttcctacatgggaacgggcatgaacctgagcttgaaacca
gctcgttgctatgcctcagcagcagccattaagctgcagcccaaagggatagatatagag
acactaggggccttcaatggtgcaccagttgtggaggtggaaatggacatctttgaggac
aaaccatggagaaagccaggtgccgacctctcagactacttcaactatggttttaatgag
gaaacgtggaagggatactgtgagagacagcgcagactacagcttggcctggagcccagt
gctcctctcagttttgaaaacaagataacagttcagcagggaagggcaaccactttagaa
aaggatacagaaccgtcttccatcaagcctgattacaagccagactttccccctgcttca
gtcctggccctcgctgccaacagactgaaggcaggacccccacctaacaggaaattgggt
ggaactattgatgtgattggtggacagacaggagccattcgccgggttgaaggccgaagg
agggaaatgcaggaacagaatcctatccaggtgctcggagaccatggtaacaaggtacaa
cccttggttccaccagcaggacctcctcttcctcttccaatgggtatgcccccaccacac
ttcctgcatcctcctccaccagtatctggtatgcccccacctcttcaccccccaggtatg
cccccaccttccattacaggcctgttcctacctccccttgctcctccccctaccttgatg
atgccacctgtggatagcagtagagcccctcttccttttggatacaacagtggagagtca
agcttcattagctaccctccagtctcatcatcacacatgccttggggctctgtgatggag
aaggggggggaagacagaggacgagggcattgggagtaccaaggaagtcatagagaaaga
gacagagatcaagagagaggtcatactccaaccaccagcgaatataatgaggatgaccgt
taccactactacagccatgatcgagagagtgagcgagaatttgagcacagttaccttcat
gttcacgacagcagcggtgggcgtagcagggagagggaggagcatcagcgagacagacgc
catcgtgacaaggaggagagtggtaaacacaagtcttccaaacgcaagcagcatgatgat
gagggggagggtcatcgcagacacaagcacaagaaaagcaaacgcagcaaagaggacaag
gatgtcccagaggatatgttggggcgtggggaagagcacaaggactga
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