Oncorhynchus nerka (sockeye salmon): 115147164
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Entry
115147164 CDS
T07952
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115147164 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
one03041
]
115147164 (prpf4)
Spliceosome [BR:
one03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
115147164 (prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_EML
WD40_MABP1-WDR62_1st
PRP4
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_SCAP
WD40_like
WD_LRWD1
Beta-prop_WDR19_1st
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_WDR35_TULP_N
DUF7779
Motif
Other DBs
NCBI-GeneID:
115147164
NCBI-ProteinID:
XP_029545090
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All DBs
Position
LG19:complement(6754013..6759989)
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AA seq
506 aa
AA seq
DB search
MSDDEEAPLVKKTRIFYGSLEEKERERLGREASGSGKDSVKAGIEAGNINISSGESLELE
ERVTERQSEVLADFERRKRARQITVSTDDAEVKACLRALREPITLFGEGPAERRERLRNI
LSVVGPDALKKSKKDDEKSKRSQEECQQTWYHEGPTTLKEARLWLARYSLPRAVKRLEDA
RAHREIPESTRTVRTQELHKTLRNLNNFCSQIGDDRPISFCQFSPNSKMLVTASWSGLCK
LWNVPDCTLVRTLRGHNTHVGAICFHPQATLTLEDSDVNMASCAADGSVKLWSLDSDVPV
ADIEGHSMRVARVAWHPSGRFLGTTCYDNSWRLWDLEAQEEILHQEGHSKGVHDMQFHPD
GSLAATGGLDSFGRIWDLRTGRCVMFLEGHLKEIYSIDFSPNGYHAATGSGDNTCKVWDL
RRRKCIYTIPSHQNLVSSVKFQPNNGHFLLTGAYDNTAKVWTHPGWSPLKTLAGHEGKVM
GVDMSPDGQLIATCSYDRTFKLWMSE
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacgatgaagaagctccgctggtgaagaagaccaggatcttctatggcagtttg
gaggagaaggagagggagaggctgggacgagaggcttctgggtcaggcaaagattctgtc
aaagcaggaatcgaggctggcaacattaacatctccagtggcgagtcccttgagcttgag
gaacgtgtgactgagcgccagtctgaggtattggctgactttgaacgcagaaagagagcg
agacaaatcacagtatccacagatgatgcagaggtcaaagcctgcttacgggccctcagg
gaaccaatcacactgtttggggaggggcctgctgagagacgagagaggctaaggaatatc
ctctctgtagtgggtccagatgcattgaagaaatcgaagaaggacgatgagaaatccaaa
cgctcccaagaggagtgtcagcagacatggtaccatgaagggccgaccactcttaaggag
gcaaggctttggttggccagatactctctgcccagggctgtgaaaaggttggaagatgcc
agagctcacagggagatcccagaatctacacggacagtcaggacgcaagaacttcacaag
acgctcaggaacctgaataacttctgcagtcagatcggtgacgacaggcctatatccttt
tgccagttcagccccaactccaaaatgctggtgactgcatcttggagtggcctgtgtaaa
ctgtggaatgttcctgactgtacccttgtccgtacccttcgaggccacaatacccacgtg
ggggccatctgttttcatcctcaggccactctgactctggaggactctgatgttaacatg
gcctcctgtgctgccgacggctccgtcaaactctggagtctggacagtgacgtgcctgtc
gctgacatcgagggccactccatgagggtggcgagagtagcctggcatccctctggaagg
ttcctgggcaccacctgctatgataattcgtggaggctgtgggacctggaagcccaggag
gagatcctgcaccaagagggacacagtaaaggagtccatgacatgcaattccaccctgat
ggctctctggcagctactgggggtctggattcatttggccgtatttgggaccttcggacc
gggcgctgtgtgatgttcctggagggccacctcaaagagatctacagcatcgacttctct
cccaacggctaccacgcagcaacaggaagtggggataacacctgtaaggtgtgggacctg
cgtcgcaggaagtgcatctacaccatcccctcccatcagaacctggtgtcctctgtcaaa
ttccagcccaataacggtcacttcctcctgactggggcctatgacaacacagccaaggtg
tggacccacccgggctggtcccccttgaagaccctggcgggccacgagggaaaggtgatg
ggcgtggacatgtcccctgacggacagctcatcgccacctgctcctacgaccgcaccttc
aagctctggatgtcagaatga
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