Oscillatoria nigro-viridis: Osc7112_0549
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Entry
Osc7112_0549 CDS
T02375
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD subfamily
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
oni
Oscillatoria nigro-viridis
Brite
KEGG Orthology (KO) [BR:
oni00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oni03021
]
Osc7112_0549
Transcription machinery [BR:
oni03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Osc7112_0549
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
HTH_Mga
Xre-like-HTH
DUF4143
SR_plectin_7
Phage_terminase
Motif
Other DBs
NCBI-ProteinID:
AFZ05145
UniProt:
K9VD31
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All DBs
Position
complement(642218..643177)
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AA seq
319 aa
AA seq
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MKTLKSSDTDSVRAYLREIGRVPLLTHEQEILYGKQVQRSTALHQEKNILAEELGRDPTA
AEWAQAVGLSEAQLQRTIEQGERAKRQMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIG
MQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLA
QQLGRAATAAELASELELTPKQIREYLDRARLPLSLDLRVGDNQDTELGDLLEDTGTTPE
DFALQSSLRTDLDQLMAELTQQQREVLALRFGLEDGQTLTLAKIGDRLNISRERVRQIER
EALTKLRKRKQDINDYLAS
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atgaaaactcttaagtcctcagatacagattctgttcgcgcttacttgcgggaaatcggc
cgcgttcccttgttgacccatgagcaagaaatactctacgggaaacaggtacagcgctca
accgcactgcatcaggagaaaaatattttagccgaagagttaggccgcgacccgacggcg
gctgaatgggcacaggcagttgggctgtctgaggcacagttgcagcggacgatcgagcag
ggggaaagggcaaaacgccaaatggtggaagcgaatctccgcctggtagtctctgttgcc
aaaaaatatatcaagcgcaacgtagatttactggatctaattcaggaaggcacgatcggg
atgcagcggggagtagaaaaatttgacccgactaagggctacagattttctacttatgct
tattggtggattcgtcaggcaattacccgggcgatcgccgaaaaaggccgcaccatccgc
ttgccgatccacatcaccgaaaagctcaacaaaattaaaaaggctcagcgccaacttgct
caacagctcggtcgcgcggccacggctgctgaattggcatcagagctagaattgactccc
aaacagattcgcgaatatctcgatcgggcgcgcctgccactttccctggacttgcgcgtg
ggagacaatcaagatacagagttgggcgatttgttggaagatacgggtactaccccggaa
gattttgccctgcaatcttccctgcggactgacttagaccagctaatggcggaactgact
cagcaacagcgagaagtgctcgccttgcggttcggtttagaagacgggcaaaccctaact
ttggccaaaataggcgatcgtctcaacatcagtcgggaacgagtgcggcaaatagaacgg
gaagctttgaccaaactccgcaagcgcaagcaagatatcaacgattatctagccagctag
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