Oscillatoria nigro-viridis: Osc7112_2954
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Entry
Osc7112_2954 CDS
T02375
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
oni
Oscillatoria nigro-viridis
Pathway
oni03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oni00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Osc7112_2954
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oni03019
]
Osc7112_2954
03009 Ribosome biogenesis [BR:
oni03009
]
Osc7112_2954
Enzymes [BR:
oni01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Osc7112_2954
Messenger RNA biogenesis [BR:
oni03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Osc7112_2954
Ribosome biogenesis [BR:
oni03009
]
Prokaryotic type
rRNA processing factors
Osc7112_2954
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
AFZ07352
UniProt:
K9VIM3
LinkDB
All DBs
Position
complement(3450503..3452806)
Genome browser
AA seq
767 aa
AA seq
DB search
MTKQIVIAEQHRIAAVFSEDQIQELVVATGSHQVSDIYLGIVENVLPGIDAAFVNIGDPE
RNGFMHVTDLGPLRLKRSAGAITELLTPQQKVVVQVMKEPTGSKGPRLTGNITLPGRYLV
LMPYGRGVNLSRRIKSEAERNRLRALAILVKPAGMGLLVRTEAEGMTEEAIMEDLEVLQK
QWEAVQLEGGTSRAPALLNRDDDFIQRVLRDMFSGDVNRIVVDSQNGIKRVKQQLMSWNG
GKLPAGVLIDHHRERASILEFFRVNAAIREALRPRVDLPSGGYVIIEPTEALTVIDVNSG
SFTRSATARETVLWTNCEAATEIARQLRLRNIAGVIIVDFIDMESRRDQLQVLEHFNKAL
KADKARPQIAQLSELGLVELTRKRQGQNIYELFGHTCPTCSGLGHLVHLPGEEDFAAAVR
ESGDRTVATSNRVLLNLPEGLERRSLTPVAAATPAPVREERPPEPARAAWEPQSESLDFE
TGSNALPLDLLNHPSYQDLGNGTRRRRRRRIGEEPFALPAEEEPVRSKLRLPNTSSAPVA
DTRSEYLAPPGIRAASEGFGLVNMATVGRREDFDRVRPAKSELMKPMVEPPEVISVEMTA
EEQDVYALMGISPLVLTDRSVKNPKNAIVSVTLPGAAPNKPPFEQLEFEFEPAPSAQNAE
EPDYYPERSAVEPVFSDEDDEAQIYGESSIDETDDFDPMEEPSDVMGESNEPIESNEPIE
SNEPIESYEPIESYEPIEPSQPSEPSEPEEPAINRRRRRRSSAVVDE
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagcagatagttatagcagagcagcatcgcattgctgccgtcttttcagaagat
caaatccaagaacttgtggtagccacaggcagccaccaagtcagtgacatttacttggga
attgttgaaaatgtactccctgggatagatgcggcattcgtcaatattggcgatccagaa
cgtaacgggtttatgcacgtcacagacctcggcccgctgcgccttaaacgctcggcagga
gcaattacagaactcctgaccccccagcagaaagtggtggtacaggtaatgaaagaaccg
acgggcagcaaaggcccccggctgacaggcaacattaccctgccgggccgctatttggta
ctgatgccctacggcaggggagtcaatctctcgcggcggatcaagtcggaagccgagcgc
aaccgcctcagagccctggctattttggtgaaaccggccgggatggggctgctggtacgc
actgaagctgaagggatgactgaagaagcgatcatggaagatttggaagtcctccaaaaa
cagtgggaagccgttcaacttgaaggcggtacttcgcgggcgccggcactgctcaaccgg
gatgacgattttatccagcgggtgctgcgagatatgttcagcggtgacgtgaatcggatt
gtggtggactcgcaaaatggaattaagcgggtgaagcagcagttgatgagctggaacggc
ggtaaacttcctgcgggagttttgatcgaccaccaccgagagcgcgcctcgattttagaa
tttttccgggttaacgctgcgattagagaagccctcagaccaagggttgatttgccttcg
ggcggttatgtgattatcgagccgactgaggcgctgacggtgatcgatgtcaactctggc
tcgtttactcgatcggcgacggctcgggaaactgtactctggacaaattgcgaagcagca
acggaaattgccagacaactgcggttacgcaatattgccggggtgattattgttgacttt
attgacatggaatcccgccgcgatcagttgcaggtgctggaacatttcaataaagctctc
aaagctgacaaagctcggccgcaaatcgctcaactgtcggaattgggactggtagaactg
acccgcaagcgccaaggtcaaaatatttatgagttgttcggtcacacttgccctacttgc
agcgggttgggtcatctggtgcacttgcccggggaagaagatttcgccgcagcggtgcgg
gaatcgggcgatcgcactgttgctacgtcgaaccgcgttttgttgaatttgcccgaagga
ttggaacgccgcagcttgacgcctgtggcggctgcaactcctgcaccagtgcgggaagaa
cgcccccccgaacctgctcgggctgcttgggaacctcaaagcgaaagtttggattttgag
accggcagcaacgccttgcctttggacttgctcaaccatcccagctatcaggatttgggg
aacggaactagacgccgccgccgccgccggattggcgaagagccttttgctctcccggcg
gaggaggagccggtacgcagcaagttgcggctgccgaatacttcgagcgcgcccgtcgcg
gatacgcgctctgagtatctggcaccccccggcatccgggcggcttcggagggcttcggg
ctggtgaatatggcgactgttggcaggcgcgaggatttcgatcgcgtgcgtccggctaag
tctgaattgatgaagccgatggtggagcctccagaggtgatttcggtggaaatgacggcg
gaggagcaggatgtttatgctctgatgggcatttctcctttggtgcttaccgatcgcagc
gtgaaaaatcctaagaatgcgatcgtttcagtcactctccccggagcggccccgaacaag
ccgcctttcgagcagctcgaatttgaatttgaaccggcgccgtctgcacagaatgctgag
gaaccggattattatccagaaaggtcggcagttgagcctgttttttctgatgaggatgat
gaggcccaaatttacggcgagagttcgatcgacgaaactgatgattttgatccgatggag
gaacccagcgatgtgatgggcgaatctaatgaaccgatcgaatctaatgaaccgatcgaa
tctaatgaaccgatcgaatcctatgagccgatcgaatcctatgagccgatcgaacccagc
caacccagtgaacccagcgaacccgaggagcctgctatcaaccgccgccgccgccgccgc
tcgtcagccgttgtggatgagtga
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