Oreochromis niloticus (Nile tilapia): 100690597
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Entry
100690597 CDS
T06104
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03440
Homologous recombination
onl03450
Non-homologous end-joining
onl04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
100690597
03450 Non-homologous end-joining
100690597
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
100690597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
onl03032
]
100690597
03400 DNA repair and recombination proteins [BR:
onl03400
]
100690597
DNA replication proteins [BR:
onl03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
100690597
DNA repair and recombination proteins [BR:
onl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
100690597
BRCA1-C complex
100690597
NHEJ (non-homologous end-joining)
MRX complex
100690597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_15
AAA_21
SbcC_Walker_B
SMC_N
Golgin_A5
AAA_13
AAA_29
AAA_16
Motif
Other DBs
NCBI-GeneID:
100690597
NCBI-ProteinID:
XP_019207047
Ensembl:
ENSONIG00000003635
LinkDB
All DBs
Position
LG23:complement(23773195..23795082)
Genome browser
AA seq
1308 aa
AA seq
DB search
MKAKMSKINEMSILGVRSFGIEDKDKQVISFFTPVTVLVGPNGAGKTTIIECLKFATSGE
LPPGSKGGAFVHDPKDAQRTVVRAQIELSLSDIKGEEIKIQHFMSCSLIENKYSFKREEQ
NIKRTKDGRRVSRSVKCGDLHQEITSALGVSKSVLNDVIFCHQEESNWPLSEDRVLKEKF
DSIFNVTKYNKARAKMHELRLKQSRTVERCQAELSYLEKNKEKAQQLRDNVAQKQADLRA
SRDLILHIENQINPLETLLSDIKMKLENVTKLENEIKALDSLRKQMEEHNKELEETMEEV
FQGSDEQLQHTYENHQRTVREKEQKLQQHQEELQTFDQEYQRLTRDTNDLLLEKGRLQHE
AERHTKNTEDRDSLVHSLSSCLEMEGYDQLPFTVSQLKSFYHQVTQRLEQEKERVSQLLA
ELQKLEQQKQQSVDEMRDRKTCMERTVEMKRDEQQKKQQELKNITEELQRLQDSSSQLQE
LENKLAEVEREDAVQSSSVEELKAEVEELQEEKAQLDCTQRQLDEEMETLNMHTAALTQM
DILKKGKAEMEEQILQIRSRHFEDLVSLLGHFPNKKELQDWISSKSKEISSTRDRLTKLK
MDLASNEQNKSHITAELLKKEQQLATDEEKFLNVCSSRDLEQDLSNLQRDLGEIFKTKAL
LAGTKVVYTQFISELSEHRKPCCPMCRRSFPSESEVQEVVRVLQSKLHLVPEKLKITEQD
LERTERRREEIVALRPVREAIVQFQENELPALRKRLQTVDREAERLKGDVEEQEALLTIL
RSEEEKAKDCLQGISLIDSYLRNLEEVERKIDEQAAKLQEVNLDNTFQQLSQEKQETQDQ
LDTTYSTIVGKHKQIQDQQEQIQRLKSAAIEMRDEQLQLIRDKQKQQHLEELSAEITARM
EALTTEIREGNEELRPLSAALEKLQQEKQKLVEQKKQREEEEQKKIRNIEERLKEITALQ
RDVTKYVDEGRDKYKEDKESEYQAATTQLQEAERNKERISTEMGNIQQDKDTQKVKERSL
WDNLTLRKRVNELKNMAAKREALEEKLSYMQVSQLQRQREEEESKLAELKSERSREEGAQ
KPLEEQILEYSKQLEEDQYGKAEELHRDKMIEMRTTQLLSKDLKLYEEALDQAIVKFHSM
KMDEINQNIRDLWRSTYRGQDIEYIEIRSEVEERSEGRRSYNYRVVMMKGDADVNMRGRC
SAGQKVLASLIIRLALAEAFCLDCGILALDEPTTNLDRENIKSLADALVEIIRTRSQQRH
FQLLIITHDEDFVQLLVRSGCIQHFYRISKNQDQNSEITKHSTAFLSV
NT seq
3927 nt
NT seq
+upstream
nt +downstream
nt
atgaaagccaaaatgtcaaagataaatgagatgagcattctgggggtgaggagcttcggg
attgaagacaaagacaaacaggtcatctctttcttcactcctgtgactgtgctggttgga
cccaacggagcaggaaaaacaacgattattgaatgtctcaagtttgcaacatcaggagaa
cttccacctggatctaaaggaggtgcttttgttcatgatccaaaggacgcccagaggaca
gttgtacgagcccagattgagctctcactctcagacatcaagggagaggaaatcaagatc
caacacttcatgtcctgctctctgatagaaaataaatactcctttaaacgtgaagagcag
aacattaaaagaacaaaggatggaaggagagtgagcaggtctgttaagtgtggcgacctg
caccaggagataacgtctgcgctgggtgtatcaaagtcagtgttgaacgacgtcatcttc
tgtcaccaggaagagtctaactggccacttagtgaagacagagttctcaaagaaaagttt
gactccatcttcaatgtaaccaagtataacaaagcgagggcgaagatgcatgagctgcgt
ttgaagcaaagtcggacagtcgaacggtgtcaggcagagctgtcctacctggagaaaaac
aaggagaaggcccagcagcttagagacaatgtagcccaaaagcaggctgatctgagggcc
tcacgagatctgatcctgcacatagagaaccagatcaatccacttgagacactgctgagt
gacataaaaatgaaacttgaaaatgtgacgaagctagaaaatgaaatcaaagctctggac
agcttgaggaaacagatggaggagcacaacaaggagctggaggaaactatggaagaggtg
tttcagggttcagacgagcagctacagcatacttacgagaaccaccagaggacagtgagg
gagaaagagcagaagctgcaacagcaccaggaggagctgcagacctttgaccaagaatac
cagagactgaccagagacacgaatgatctgctgttagaaaaaggtcgtctacaacatgaa
gctgaacgtcacactaagaacactgaggaccgtgacagcctggtccactctttgtcatcc
tgtctggagatggagggttacgaccagctgccctttactgtttctcaactcaagagcttt
taccatcaagtcacacagagactggagcaggaaaaggagagagtcagtcagcttttggca
gagctgcagaaactggagcagcagaagcagcagtctgttgatgaaatgagggacaggaag
acgtgcatggagagaacggtggagatgaaaagagacgagcagcaaaagaagcaacaagag
ctgaaaaacatcacagaagagctgcaaagactgcaggattcatctagtcaactgcaagag
ctggaaaataaactggctgaagtggagcgtgaggatgcagttcagagctccagcgtggag
gagctgaaggccgaggtcgaggagctccaggaagaaaaggctcaactcgactgcacacag
agacagctcgacgaagagatggagacactcaacatgcacacagctgcactcacacagatg
gacatactgaaaaagggcaaagcagagatggaggagcagattcttcagatccggtctcgt
cactttgaggatctggtgtctctattgggccactttccaaacaagaaagagctgcaggac
tggatctcttccaagtcaaaagaaatcagcagcaccagggacagacttacaaaactcaaa
atggacttggcatcaaatgagcagaataaaagccacattactgctgagctgctgaagaag
gagcagcagttagccacagatgaagagaagttcttgaatgtttgcagcagtcgagatctg
gagcaggacctgagcaacctgcagagagatctgggcgagatattcaagacaaaagctcta
ctagctggaactaaagtggtgtacacccagttcatcagcgagctaagcgagcacaggaag
ccctgctgccccatgtgccgacgatcgtttccctcagagtctgaggtgcaggaagtcgtc
agagtcttgcagtctaaactacacctggtgccagaaaaactgaagatcactgagcaggac
ctggagaggacagagaggaggagagaggagatagtggctctcaggcctgtgagggaggcc
attgtgcagtttcaggaaaatgagctgccagcattgaggaagcggctgcagactgtggac
agagaagctgagaggctgaagggtgatgtggaggagcaggaggctctgctcaccatcctg
aggtctgaggaggaaaaagccaaagactgcctgcagggcatttccctcatagactcatac
ctgagaaaccttgaagaggtggaaaggaaaattgatgagcaggcagccaaactccaggaa
gtaaacctggacaacacatttcagcagcttagtcaggagaaacaagaaactcaggaccag
ctcgacaccacttacagcacaattgtgggtaaacataaacagatccaggaccagcaggag
cagattcagaggctgaaaagtgcagcgatagagatgagagacgagcagcttcagctgatc
agagacaaacagaagcagcagcacctggaggagctgagtgcagagatcactgctaggatg
gaggccttaaccacagagatcagggagggaaatgaagaactgcgccctctatcagctgct
ctggagaagctgcagcaggaaaagcaaaagctggtggagcagaagaagcagagagaggaa
gaagagcagaagaagattcgtaacattgaggagagactgaaggaaatcactgccttgcaa
agagacgtcactaaatatgttgatgagggaagagacaaatacaaagaggacaaagagtca
gagtatcaagcagcaacgactcagctccaagaggctgagaggaataaagagaggatcagc
acagagatgggaaacatccagcaggacaaagacactcaaaaggtcaaagagcgctcctta
tgggacaacctgaccttgagaaagcgcgttaatgagctgaagaacatggcggccaaacgt
gaggctctggaggaaaaactgagctacatgcaagtctcgcagcttcagcgacaacgtgag
gaagaggaaagcaagctggccgaactgaagagcgagcgcagtcgggaggagggcgcacag
aaacccctggaggagcagatactggaatacagcaaacagctggaggaagatcagtacggc
aaagccgaggagctccacagagacaagatgattgagatgaggaccacacagctgctcagc
aaagacctgaaactctacgaagaggctctagatcaagccatcgtgaagttccacagcatg
aagatggatgagatcaaccagaacatcagagacctgtggcgcagcacctacaggggtcaa
gatatcgagtacatcgagatcaggtctgaggtggaggagaggtcagaggggcggaggagc
tacaactacagagtagtgatgatgaaaggagacgcagacgtgaatatgagagggcgctgc
agtgccggtcagaaggtgctggcatccctgatcatccggctcgctctggcagaggccttc
tgtctcgactgtggaatcctggccctggatgagcccaccaccaacctggaccgggagaac
atcaagtccctggcagacgctctcgtagagatcatcaggactcgctctcagcagcgtcac
ttccagctgctgatcatcactcatgacgaggactttgtgcagctgctggttcggtccggg
tgcatccagcacttctaccgcatcagcaagaaccaggaccagaactcagagatcaccaag
cacagcacagccttcctctctgtgtga
DBGET
integrated database retrieval system
