Oreochromis niloticus (Nile tilapia): 100691162
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Entry
100691162 CDS
T06104
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03440
Homologous recombination
onl03450
Non-homologous end-joining
onl04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
100691162
03450 Non-homologous end-joining
100691162
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
100691162
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
onl03032
]
100691162
03400 DNA repair and recombination proteins [BR:
onl03400
]
100691162
DNA replication proteins [BR:
onl03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
100691162
DNA repair and recombination proteins [BR:
onl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
100691162
BRCA1-C complex
100691162
NHEJ (non-homologous end-joining)
MRX complex
100691162
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SbcC_Walker_B
SMC_N
ABC_tran
AAA_29
AAA_13
AAA_16
Motif
Other DBs
NCBI-GeneID:
100691162
NCBI-ProteinID:
XP_019207054
Ensembl:
ENSONIG00000018997
LinkDB
All DBs
Position
LG23:complement(23875032..23900870)
Genome browser
AA seq
1304 aa
AA seq
DB search
MSKINEMSILGVRSFGIEDKDKQVISFFTPVTVLVGPNGAGKTTIIECLKFATSGELPPG
SKGGAFVHDPKDAQRTVVRAQIELSLSDIKGEEIEIQRFMSCSLIENKYSFKSEEQNIKR
AKDGRRVSRSVKCGDLHQEITCALGVSKSVLNDVIFCHQEESNWPLSEDRVLKEKFDSIF
NVTKYNKARAKMYELRLKQSRTVERCQAELSYLEKNKEKAQQLRDNVAQKQADLRASRDL
ILHIENQIDPLETLLSNIKMKLENVTKLENEIKALDSLRKQMEEHNKELEETMEEVFQGS
DEQLQHTYENHQRTVREKEQKLQQHQEELQTFDQEYQRLTRVTNDLLVEKGRLQHEAERH
TKNTEDRDKLVHSLSSCLEMEGYDQLPFTVSQLESFYHQVTQRLEQEKERVSQLLAELQK
LEQQKQQSVDEMRDRKTCTERTVEMKRDEQQKKQQELKNITEELQRLQDSSSRLQELENK
LAEVEREDAVQSSSVEELKAEVKKLQSEKVELDCTQRQLDEDMETLNMHTAALTQMDILK
KGKAEMEEQILQIRSRHCEDLVSLMGHFPNKKELEDWISSKSKEISSTGDRLTKLKMDLA
SNEQNKSHITAELLKKEQQLATDEEKFLNVCSSRDLEQNLSNLQRDLDEIFKTKALLAGT
KVVYTQFISELSEHREPCCPVCRRSFPSESEVQEVVRVLQSKLHLVPEKLKITEQDLERT
ERRREEIVALRPVREAIVQFQENELPALRKRLQTVDREAERLKGDVEEQEALLAILRSEE
EKAKDCLQGISLMDSYLRNLEEVERKIDEQAAKLQEVNLDNTFQQLSQEKQETQDQLDTT
YSTIVGKHKQIQDQQEQIQRLKSAAIEMRDEQLQLIRDKQKQENLEELSAEITARMEALT
TEIREGNEELRPLSAALEKLQQEKQKLVEQKKQREEEEQKKIRNIEERLKEITALQRDVT
KYVDEGRDKYKEDKESEYQAATTQLQEAERNKERISTEMGNIQQDKDTQKVKERCLWDNL
TLRKRVNELKNMAAKREALEEKLSYMQVSQLQRQREEEESKLAELKSERSREEGAQKPLE
EQILEYSKQLEEDQYGKAEELHRNKMIEMRTTQLLSKDLKLYEEALDQAIVKFHSMKMDE
INQNIRDLWRSTYRGQDIEYIEIRSEVEERSEGRRSYNYRVVMMKGDADVNMRGRCSAGQ
KVLASLIIRLALAEAFCLDCGILALDEPTTNLDRENIKSLADALVEIIRTRSQQRHFQLL
IITHDEDFVQLLVRSGCIQHFYRISKNQDQNSEITKHSTAFLSV
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagataaatgagatgagcattctgggcgtgaggagctttgggattgaagacaaa
gacaaacaggtcatctctttcttcactcctgtgactgtgctggttggacccaacggagca
ggaaaaacaacgattattgaatgtctcaagtttgcgacatcaggagaacttccacctgga
tctaaaggaggtgcttttgttcatgatccaaaggacgcccagaggacagttgtacgagcc
cagattgagctctcactctcagacatcaagggagaggaaatcgagatccaacgcttcatg
tcctgctctctgatagaaaataaatactcctttaaaagtgaagagcagaacattaaaaga
gcaaaggatggaaggagggtgagcaggtctgttaagtgtggcgacctgcaccaggaaata
acgtgtgcgctgggtgtatcaaagtcagtgttgaacgacgtcatcttctgtcatcaggaa
gagtctaactggccacttagtgaagacagagttctcaaagaaaagtttgactccatcttc
aatgtaaccaagtataacaaagcaagggcgaagatgtatgagctgcgtttgaagcaaagt
cggacagtcgaacggtgtcaggcagagctgtcctacctggagaaaaacaaggagaaggcc
cagcagcttagagataatgtagcccaaaaacaggctgatctgagggcctcacgagatctg
atcctgcacatagagaaccagatcgatccacttgagacactgctgagcaacataaaaatg
aaacttgaaaatgtgacgaagctagaaaatgaaatcaaagctctggacagcttgaggaaa
cagatggaggagcacaacaaggagctggaggaaactatggaagaggtgtttcagggttca
gatgagcagctacagcatacttacgagaaccaccagaggacagtgagggagaaagagcag
aagctgcaacagcaccaggaggagctgcagacctttgaccaagaataccagagactgacc
agagtcacgaatgatctgctggtagaaaaaggtcgtctacaacatgaagctgaacgtcac
actaagaacactgaggaccgcgacaaactggtccactctttgtcatcctgtctggagatg
gagggttacgaccagctgccctttactgtttctcaactcgagagcttttaccatcaagtc
acacaaaggctggagcaggaaaaggagagagtcagtcagcttttggcagagctgcagaaa
ctggagcagcagaagcagcagtctgttgatgaaatgagggacaggaagacgtgcacggag
agaacggtggagatgaaaagagacgagcagcaaaagaagcagcaagagctgaaaaacatc
acagaagagctgcaacgactgcaggattcatctagtcgactgcaagagctggaaaataaa
ctggctgaagtggagcgtgaggatgcagttcagagctccagcgtggaggagctgaaggcc
gaggtcaagaagctccagagcgaaaaggttgaactcgactgcacacagagacagctcgat
gaagacatggagacactcaacatgcacacagctgcactcacacagatggacatactgaaa
aagggcaaagccgagatggaggagcagattcttcagatccggtctcgtcactgtgaggat
ctggtgtctctaatgggccactttccaaacaagaaagagctggaggactggatctcttcc
aagtcaaaggaaatcagcagcaccggggacagacttacaaaactcaaaatggacttggca
tcaaatgagcagaataaaagccacattactgctgagctgctgaagaaggagcagcagtta
gccacagatgaagagaagttcttgaatgtttgcagcagtcgagatctggagcagaacctg
agcaacctgcagagagatctggacgagatattcaagacaaaagctctactagctggaact
aaagtggtgtacacccagttcatcagcgagctgagcgagcacagggagccctgctgcccc
gtgtgccgacgatcgtttccctcagagtctgaggtgcaggaagtcgtcagagtcttgcag
tctaaactacacctggtgccagaaaaactgaagatcactgagcaggacctggagaggaca
gagaggaggagagaggagatagtggctctcaggcctgtgagggaggccattgtgcagttt
caggaaaatgagctgccagcattgaggaagcggctgcagactgtggacagagaagctgag
aggctgaagggtgatgtggaggagcaggaggctctgctcgccatcctgaggtctgaggag
gaaaaagccaaagactgcctgcagggcatttccctcatggactcatacctgagaaacctt
gaagaggtggaaaggaaaattgatgagcaggcagccaaactccaggaagtaaacctggac
aacacatttcagcagctcagtcaggagaaacaagaaactcaggaccagctcgacaccact
tacagcacaattgtgggtaaacataaacagatccaggaccagcaggagcagattcagagg
ctgaaaagtgcagcgatagagatgagagacgagcagcttcagctgatcagagacaaacag
aagcaggagaacctggaggagctgagtgcagagatcactgctaggatggaggccttaacc
acagagatcagggagggaaatgaagaactgcgccctctatcagctgctctggagaagctg
cagcaggaaaagcaaaagctggtggagcagaagaagcagagagaggaagaagagcagaag
aagattcgtaacattgaggagagactgaaggaaatcactgccttgcaaagagacgtcact
aaatatgttgatgagggaagagacaaatacaaagaggacaaagagtcagagtatcaagca
gcaacaactcagctccaagaggctgagaggaataaagagaggatcagcacagagatggga
aacatccagcaggacaaagacactcaaaaggtcaaagagcgctgcttatgggacaacctg
accttgaggaagcgcgttaatgagctgaagaacatggcggccaaacgtgaggctctggag
gaaaaactgagctacatgcaagtctcgcagcttcagcgacaacgtgaggaagaggaaagc
aagctggccgaactgaagagcgagcgcagtcgggaggagggcgcacagaaacccctggag
gagcagatactggaatacagcaaacagctggaggaagatcagtacggcaaagctgaggag
ctccacagaaacaagatgattgagatgaggaccacacagctgctcagcaaagacctgaaa
ctctacgaagaggctctagatcaagccatcgtgaagttccacagcatgaagatggatgag
atcaaccagaacatcagagacctgtggcgcagcacctacaggggtcaagatatcgagtac
atcgagatcaggtctgaggtggaggagaggtcagaggggcggaggagctacaactacaga
gtagtgatgatgaaaggagacgcagacgtgaatatgagagggcgctgcagtgccggtcag
aaggtactggcatccctgatcatccggctcgctctggcagaggccttctgtctcgactgt
ggaatcctggccctggatgagcccaccaccaacctggaccgggagaacatcaagtccctg
gcagacgctctcgtagagatcatcaggactcgctctcagcagcgtcacttccagctgctg
atcatcactcatgacgaggactttgtgcagctgctggttcggtctgggtgcatccagcac
ttctaccgcatcagcaagaaccaggaccagaactcagagatcacaaagcacagcacagcc
ttcctctctgtgtga
DBGET
integrated database retrieval system
