Oreochromis niloticus (Nile tilapia): 100691393
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Entry
100691393 CDS
T06104
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03015
mRNA surveillance pathway
onl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100691393
09123 Folding, sorting and degradation
03018 RNA degradation
100691393
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
onl03019
]
100691393
03041 Spliceosome [BR:
onl03041
]
100691393
Messenger RNA biogenesis [BR:
onl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100691393
mRNA cycle factors
Stress granule specific factors
100691393
Spliceosome [BR:
onl03041
]
Complex C
Other components
Complex C specific factors
100691393
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_3
RRM_occluded
HTH_58
POP1_C
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
100691393
NCBI-ProteinID:
XP_003452137
Ensembl:
ENSONIG00000006871
LinkDB
All DBs
Position
LG11:5906922..5912151
Genome browser
AA seq
635 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAREFTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMATVRAVPNPVLNPYQPAPPSGYFMAAIPQAQNRA
AYYSANQLAQLRPGPRWATQGVRPQHFQNMPNAMRPTAPRPQPLNTIRAAATTNTQVPRM
MASQRIPTQAVNQRPANASAAAAPVRAMPQYKYAAGVRNTQQHMASQPQVTMQQPAVHVQ
GQEPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKSSTPAGVPSV
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccagcgcgcctagctacccgatggcctccctgtatgtgggagacctgcaccca
gacgttaccgaagccatgctatacgagaaattcagcccggctggacccatcctctccatt
agagtatgcagagacatgatcacccgtcgctccctaggctatgcctatgtgaacttccaa
cagccagctgacgccgaaagagctttggacaccatgaactttgatgtaataaaaggcagg
cctctccgtatcatgtggtctcagcgtgacccctcgctgaggaagagtggggtgggaaac
atcttcatcaagaatctggacaaatctatcgataacaaggccctgtatgataccttctct
gcatttggaaatatcctgtcctgcaaggtggtttgtgatgaaaatggctcaaagggttac
ggctttgtgcactttgagacccatgaagctgctgaacgggccattgagaaaatgaacggc
atgttgctcaatgacagaaaagtatttgttgggcgcttcaaatcgcgtaaagagagggaa
gctgagcttggagcacgagccagagagtttactaacgtttatatcaagaactttggtgag
gacatggatgatgagaagctgaaggagttgtttagcaaatatgggcctgccctcagtatc
cgggttatgactgatgaaagtggcaaatccaagggatttggctttgtcagcttcgagagg
catgaagatgcccagaaggctgtagatgaaatgaatggtaaagaactgaatggcaggcaa
gtctatgtgggccgtgcacagaagaaaggggagcggcagaatgagctcaaacgcaaattt
gagcagatgaaacaggatcgcatgaccagatatcagggtgtcaatctgtatgtgaagaac
ctggatgatggccttgatgacgagcgtctgcgcaaagaattctccccatttggcaccata
acaagtgctaaggtgatgatggagggtggacggagcaaaggctttggctttgtgtgcttc
tcttctccagaagaggccactaaagctgtaacagagatgaatgggcgtattgtggctaca
aagccactgtatgtggcccttgcccagcggaaagaggagcgtcaggctcatctaaccaac
cagtacatgcaaaggatggccactgtccgagctgtgcccaaccctgtccttaacccatac
cagcctgctccaccctcaggatatttcatggcggctatcccacaggctcagaaccgtgct
gcatactactctgccaaccagctggcccagctgcgccctggcccccgttgggccactcaa
ggagtgcgtcctcagcacttccagaacatgcccaatgctatgcgcccaacagcacccagg
cctcagcccttaaacaccatccgtgcagctgccaccaccaacacccaggtcccacgcatg
atggcttctcagcgtatccccacacaggcggtcaaccagcgccctgccaatgcttcagct
gccgcagccccagtgcgtgccatgccgcagtacaaatatgcagctggtgtgcgcaacact
cagcagcacatggcctcccagccacaggtcaccatgcagcagccggcagtccatgtccaa
ggacaggagcctctaactgcctccatgctggctgcagccccacctcaggaacagaagcag
atgctgggtgagcgtctgttccctctgatccagaacatgcaccccagcctggctggcaag
atcactggtatgctgctggagattgacaactcagagctgcttcacatgcttgagtcacct
gagtcgttgcgctcaaaggtggatgaggctgttgctgtgctccaggcccaccaggccaag
gaggctgctcagaagtcctccacccctgctggtgttcccagcgtctaa
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