Oreochromis niloticus (Nile tilapia): 100691398
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Entry
100691398 CDS
T06104
Symbol
xrn1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03008
Ribosome biogenesis in eukaryotes
onl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
100691398 (xrn1)
09123 Folding, sorting and degradation
03018 RNA degradation
100691398 (xrn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
onl03019
]
100691398 (xrn1)
03009 Ribosome biogenesis [BR:
onl03009
]
100691398 (xrn1)
03016 Transfer RNA biogenesis [BR:
onl03016
]
100691398 (xrn1)
03036 Chromosome and associated proteins [BR:
onl03036
]
100691398 (xrn1)
Messenger RNA biogenesis [BR:
onl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
100691398 (xrn1)
mRNA degradation factors
5'-3' decay
5' exonucleases
100691398 (xrn1)
Ribosome biogenesis [BR:
onl03009
]
Eukaryotic type
Pre-60S particles
RNases
100691398 (xrn1)
Transfer RNA biogenesis [BR:
onl03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
100691398 (xrn1)
Chromosome and associated proteins [BR:
onl03036
]
Eukaryotic type
Gene silencing
piRNA pathway
100691398 (xrn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
100691398
NCBI-ProteinID:
XP_003453205
Ensembl:
ENSONIG00000016673
UniProt:
A0A669BQH5
LinkDB
All DBs
Position
LG18:4038578..4066076
Genome browser
AA seq
1707 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNFYLDMNGIIHQCSHPNDEDVHFRISEEKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEEKIKKALDKGE
VLPTEARFDSNCITPGTEFMARLQEQLKYFVHNKLSNDKLWQNVKVYLSGHETPGEGEHK
IMEFIRSENTKPNHDPNTRHCLYGLDADLIMLGLTSHEPNFSLLREEVRFGGKKSQKRIT
APEETTFHLLHLSLMREYIDYEFSELKNKMGSDYDLERVIDDWILMGFLVGNDFIPHLPN
LHINHDALPLLYKTYISVLPSLGGYLNENGHLNLRNFEKYLEKLAEFDREHFNEVFVDLK
WFESKVGNKYLNEAAGLAAEKEAASKDARKNEDSALCLASQTTSEKITGEEKAAAAVDEE
EEDDIFETEFRQYKRTYYMNKIGVDVVSDEFLANQAKCYVEGIQWILHYYYHGVQSWSWY
YPYHYAPYLSDIRNVSGLKLTFELGQPFMPFQQLLAVLPAASMELLPECYRHLMTSESSP
IIGYYPLDFKTDLNGKQQEWEAVVLIPFIDERCLLAAMEPCNSKLTKEEKARNCHTECAV
YSYDREMDFAYASPLPQLFPDIVHCHVRTAHIPMDAWQVSLDHISKPVDRSALYFCGFPT
LQHIKHKFYKKKGGVVVFQQSSRGENMLLDILPNQEGETTCDDVAAQVLGKSVFVNWPHL
EEARIIAVSDGETKFYLEEPPGVQRVYDRPSTPPPAKVTCLFDKEQKEWIKDVQGITEYY
LKRKGIVINETEVVLYGQLLTGRKYVPKANGVVELEKQWAKQVLPFAYQAVVKDIKAFYS
SLACFKSLDELFPPTTTVFMVGNPYYGAMGEVQDSQDVIKDGRIRVVFSVPHEPQLEPLI
QNQHKYSVKYSPGYVLASRLGITGYLVSRFSGSIFIGRGSKKNPCGEQRANVGLNLKFNK
KNEEVPGYTKRTEKEWLYSAAVEELLAEYLDRFSEVFNTVSRNSHDDVFYEDDIWPGEDQ
NGAERVAEITSWLKSHPVSSISRASCDLQVLDAAIVEMIEEAVEKTKVKKSTKKVRVTVK
PHLLFRPLEQQQGVVPDPDAEYRLFDRVINIRESFTVPLGLRGTIIGIKGAEREAEVLYE
VLFDEEFAGGLNIRCTSSRCYRLPPCALINLSHGARVDYTGHKLTAIVKPQPATGGNFSS
HRQLAGLNHSPRSPFVPTQHNNKHGVVKAASQGNRSSPSKGPIQKHQARNKEEYSNVWQS
LQNTGPPNKPPAHWHNNEGHSQQGKTQPANKSTPPAGIRLLKKNEDVSSLIPSQNTANKA
ATEFEDLIANLKISKGNQQTPPPPAPPQEGDSQPDGPLSPQSFAMKGTLVLKEMLKIDST
GTGSQSPQETSNSTPPAGQQQNRRRSSKKLAAKINVPHGDAPVLPSPAPAASANTLLGSK
VSELACICGALGMAPPDFSFIRNRQGLVVCQVKLSNGLMVHGPQCQSEHDAKEKAAFFAL
QRLNSLGSGFPLPPPLYTGVGQIRPPHMGAVFNQQGGVLLPPQGYGPAPLWGMTVPPQHH
QNQPFYGPPGTFPGAARPQPATTLPIGSHNQFIPLQVTKKRVSANKRNQETREFYSAAQT
VAKNQAQKSQNQPTGQLQGQTEPQSGKIHQQAVNSDLSSGDSTTTGAALHTPPRQTIPAT
GHTPGSASKRRQRKLAVNFEAAKVSES
NT seq
5124 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccaaaattttaccgctggatttcggaacgctacccttgtctcagtgaagtt
gtcaaggaacatcagattccagagtttgacaacttctatctggacatgaacggcatcatc
caccagtgttctcacccaaacgatgaggatgtccactttcgcatctctgaggaaaagatt
tttgcagacatcttccattacctggaggtgctcttcaggatcatcaagcctcgcaaggtc
ttcttcatggctgtggatggtgtggcgccaagggcgaagatgaaccagcagagaggacgt
agattcaggtccgccaaagaagcagaggaaaagataaaaaaagctttggataaaggagag
gtgcttcccacagaggctcgcttcgactccaactgtatcactcctggcactgagttcatg
gcgcgacttcaggaacagctcaagtatttcgtccacaacaagctctccaatgacaagcta
tggcagaatgtcaaagtctacctgtccggtcacgagacaccaggggagggggaacataaa
atcatggagtttattcggtcagagaacaccaagcccaatcatgaccccaacacgcgacac
tgcctgtacggcctggatgctgacctgattatgttgggtttgaccagccacgagccaaat
ttctccctgctcagggaggaagtccgctttggagggaagaaatcccagaaaaggataacg
gctccagaggagaccacttttcacttgcttcacttgtctctgatgagagagtatatagac
tacgagttctctgagctcaagaataagatgggttctgattatgacctggagcgagtaata
gacgactggattctaatgggtttcttggtaggaaacgatttcatccctcacctccccaac
cttcacatcaatcatgacgctctgccattgctgtacaagacgtacatcagtgtactacca
agcctggggggttatctgaatgagaacggtcacttaaacctcagaaactttgagaaatac
ctggagaagcttgctgagtttgaccgggaacattttaatgaggtctttgtggatttgaag
tggtttgaaagcaaagttggtaacaaatatctgaatgaagctgctggattggcagctgag
aaggaagctgccagcaaagatgccagaaagaatgaggattctgctctctgtctggcttcc
cagactacatcagaaaaaatcactggagaggaaaaagcagcagcagcagttgatgaagag
gaggaggatgatatctttgaaacagagttcagacagtacaaacgcacatactacatgaac
aagatcggcgtggacgtggtgtctgatgagtttctagccaaccaagccaagtgttatgtg
gaaggtatccagtggattctccactactattaccatggagttcagtcctggagctggtac
tacccctaccactacgctccctacctgtctgacatcaggaatgtatctgggttaaagctg
acctttgagcttggacagcccttcatgcccttccagcagctgttggcagtcctgcctgct
gccagcatggaactgctgcccgagtgttacaggcatctgatgactagtgaaagttcacct
attattgggtactaccctcttgactttaaaactgacctgaatggcaagcagcaggaatgg
gaagctgtggtgctcattccattcatagatgagaggtgcttattagcagccatggagccc
tgcaacagcaagctgacaaaagaagagaaggccaggaattgccacacagagtgtgcagtc
tactcgtacgacagggaaatggacttcgcctacgcctcccccctgcctcagctgttcccc
gacatcgtccactgccacgtcaggacagcgcacatccccatggacgcttggcaagtttca
ttagatcacatcagcaagcccgttgaccgctcagctctgtacttctgtggctttcccacc
ttacaacacatcaaacataagttttacaagaagaaaggcggggtggtcgtgttccagcag
agtagcagaggggagaacatgttgctggatatccttcccaaccaggaaggggaaacgaca
tgtgatgatgttgctgcacaagttctgggaaagtctgtgtttgtcaactggcctcatcta
gaggaagctcgcatcattgcagtgtcagatggagaaactaaattttatcttgaggaacca
ccgggtgtccaaagagtgtatgacaggccgagcactcctcctcccgccaaagtcacctgt
ctgtttgacaaggagcaaaaggaatggattaaggatgtccaaggaatcactgaatattac
ttgaagaggaaaggcatcgtgataaatgagacagaggtggttttatacggccaactgctg
actggaaggaaatacgttcccaaagccaatggtgtggtggaactggagaaacagtgggcc
aaacaggtcctcccctttgcctaccaggcggttgttaaggatatcaaagccttttactca
tctctggcctgcttcaagagcttagatgagctctttcctccaacaacaaccgtcttcatg
gtgggaaacccgtactatggtgccatgggagaggtgcaagattcccaagatgtcatcaaa
gatgggcggattcgagtggtcttcagtgtgccacatgagccacagctagagcccttaatc
cagaaccaacacaaatacagcgtgaaatacagtcctggatacgttctggcctctcgtctc
ggcatcaccggttacctcgtctcccgcttctctggaagcatcttcattggtagaggctct
aagaagaatccctgtggggaacaaagagctaacgttggcctgaacctgaagttcaacaag
aagaacgaggaagttcccggatacaccaagagaactgaaaaagagtggctctactctgct
gctgtggaggaactgctggctgaatacttggacagattttcagaggtattcaacacagtg
tccagaaacagtcacgatgatgttttctatgaagatgacatttggcctggagaggaccag
aatggggcagagagggtggcagaaatcacttcatggttaaaaagtcacccagtcagctcc
atcagcagggcatcctgtgacctccaagtgctggatgctgcaattgtggagatgatcgag
gaagcagtggagaaaaccaaggtgaagaagagcaccaagaaagtccgcgtcacagtcaag
cctcatctcctcttcaggcccttggaacagcagcagggtgtagttccagacccagacgcg
gaataccgtctgtttgacagagtcatcaacatcagggagagcttcaccgtcccgctggga
ctcagagggacaatcattggcattaaaggagcggagcgtgaggcagaggttctctatgaa
gtgctgtttgatgaagaatttgctggaggtctcaacatcaggtgtacatcttctcgttgt
taccgcctccctccctgcgccctgatcaacctttcccacggagcccgggtggattacact
ggccacaaactcaccgccatcgtcaaaccgcagcctgccactggcggcaatttcagctcg
caccgtcagctggcaggcctaaaccattctcctcgttcaccttttgtccccacacagcat
aacaacaaacatggtgtggtgaaggctgcctcacagggcaacaggagctctccctcaaaa
ggtcccatccaaaagcaccaggccaggaacaaagaagagtacagtaatgtgtggcagtct
ctgcagaacacagggcctcctaacaaacctcctgctcactggcacaacaatgaaggacat
tcccagcaggggaagacccaacccgccaacaaatctaccccacctgctggcatcagacta
ttgaagaaaaatgaagacgtcagctcccttattccttcacagaatacagccaataaggct
gcaacagaatttgaggacctcattgccaatctaaaaatctccaagggtaaccagcaaacc
ccaccccctcctgcccctccacaagaaggtgacagccagccagatggcccattatcccca
cagtcttttgccatgaagggaaccctggtgctgaaggagatgcttaaaattgacagcact
ggaacaggaagtcaatctcctcaagagacgtcaaacagcaccccccctgctggccagcag
cagaacaggagacgatcgtcaaagaaactcgctgcaaaaataaacgtcccacatggcgac
gcgcctgtgttgccttctccggcacctgctgcctctgccaacaccctgctgggcagtaag
gtgtcagagctggcgtgcatctgtggggctttaggtatggcgccacctgacttcagcttc
atacgcaacagacagggattagtggtgtgtcaggtgaaactgtccaacgggttgatggtt
catggcccacagtgccagtcagaacacgatgccaaggagaaagctgccttcttcgcactt
caaagactgaactcactcgggtcaggcttccccctcccacctcctctgtacacaggagtg
ggtcagatacgacctccccacatgggagctgtcttcaaccaacaaggtggtgtgctgttg
cccccacagggttatggtcctgctcctctctggggaatgacagtgcctcctcaacaccac
caaaaccagccattctacggaccaccggggactttccctggcgctgcccgcccccagcct
gcaacgacactgcccattggctcacacaaccagttcatccccttacaggtgactaagaaa
cgagtgtcggcaaataaaaggaaccaggaaactcgagagttttacagtgctgcccaaact
gttgctaagaaccaagcacagaaatcccagaaccagccgactggccaattgcaaggtcag
actgaaccacagagcggtaaaatccaccaacaagctgttaacagcgacctctcctctggt
gactctacgacaacgggggcggcactgcatacaccacctaggcaaaccataccagcaaca
ggccacacccccggctccgcctccaagagacggcagaggaagctagcagtcaactttgag
gcagctaaagtctcagaatcatga
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integrated database retrieval system
