Oreochromis niloticus (Nile tilapia): 100691930
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Entry
100691930 CDS
T06104
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl04510
Focal adhesion
onl04512
ECM-receptor interaction
onl04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100691930
04518 Integrin signaling
100691930
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100691930
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
onl00536
]
100691930
Glycosaminoglycan binding proteins [BR:
onl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100691930
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
100691930
NCBI-ProteinID:
XP_003451887
LinkDB
All DBs
Position
LG5:5589607..5634041
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AA seq
1491 aa
AA seq
DB search
MFSFMDSRTVLLLVASQVCLLAVVRCQVEDDQEDAFSCVQDGQRYNDKDVWKPEPCRICV
CDTGTVLCDEIVCEELKDCPKPEIPFGECCPICAADQPSTSGIPGVKGQKGEPGDITDVI
GPRGPPGPTGPPGEQGPRGSRGEKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGAPGPQGFQGNPGEAGEPGQS
GPMGPRGPPGPPGKPGDDGEAGKPGKSGERGPSGPQGARGFPGTPGLPGIKGHRGYPGRD
GAKGETGAVGAKGESGSPGESGAPGPMGPRGLPGERGRPGASGAAGARGNDGLPGPAGPP
GPVGPSGAPGFPGSPGAKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGASGNPGTDGIP
GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEIGPP
GLQGPNGPQGEEGKRGPRGEPGSAGPRGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPS
GASGPKGASGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGAR
GQPGVMGFPGPKGATGEPGKSGEKGLAGAPGLRGLPGKDGETGSAGPPGPAGPAGERGEQ
GQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGPAGATGPRGERGFPGERGAAGSQGLQ
GPRGLPGTPGTDGPKGAIGPAGTAGAQGPPGLQGMPGERGGAGIPGPKGDRGDVGEKGPE
GAPGKDGARGLTGPIGPPGPSGPNGEKGESGPAGPSGAPGVRGAPGDRGETGPPGPAGFA
GPPGADGQPGTKGEQGEPGQKGDAGAPGPQGPSGAPGPAGPTGVSGPKGARGAQGPPGAT
GFPGAAGRVGPPGPNGNPGPPGPAGPPGKDGPKGVRGDGGPPGRQGDAGLRGPAGASGEK
GDAGEDGPPGPPGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGGPGDR
GPPGPVGPPGLTGPAGEPGREGTPGSDGPPGRDGSPGNKGERGNTGPAGAPGAPGAPGAN
GPVGPTGKQGDRGEPGPQGPAGSSGPAGARGMPGPQGPRGDKGEAGEAGERGQKGHRGFT
GLQGLPGPPGQPGDQGATGPAGPAGQRGPPGPVGPAGKDGTNGLPGPIGPPGPRGRSGET
GPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQTEKGPDPLRYMRADQASGNLRQHDAEVD
ATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTVDAIKVFCN
METGESCVHPKPSSIPRKNWWTSKSTVPKHVWFGESMNGGFHFNYGDDSLAPNTAAIQMT
FLRLLSTEASQNITYHCKNSVAYMDGATGNLKKAMLLQGSNDVEIRAEGNSRFTYAVLED
GCTRHTGRWGKTVIEYRSQKTSRLPILDIAPMDIGGADQEFGVDVGAVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttatggattccaggactgtactgctacttgtagcgagccaagtttgtcta
ttagccgttgtgagatgtcaggtggaagacgaccaagaggacgcgtttagctgtgtacaa
gatggacagcgttataatgacaaggatgtgtggaaaccagagccttgtcgcatctgtgtg
tgtgacactggaaccgtcctgtgtgatgaaattgtctgcgaggagctaaaagactgcccc
aaacctgaaatcccatttggagagtgttgccccatctgtgctgctgaccagccttcaacc
tctggaatacctggtgttaagggccagaaaggcgaacccggagacattacggatgttata
ggaccaagaggaccacctggcccaacgggcccgccaggagagcaaggaccccgaggatca
agaggagagaaaggagagaagggaagtcctggcccccgtggcagagatggcgagcctggc
acccctggaaaccctggcccccctggacctccaggacctaatggaccccctggccttggt
ggaaactttgctgctcagatggctggtggttttgacgagaaggccggcggcgcacaaatg
ggtgtaatgcaaggaccaatgggccctatgggacctagaggaccacctgggccaactgga
gcacctggtccacaaggtttccaaggtaatcctggagaagctggagagcctggacaatca
ggacccatgggaccccgcggcccccctggacctcctggaaaacctggagatgatggtgaa
gctggcaaacctggtaaatcaggtgagcgtggaccttcgggacctcagggagctcgtgga
ttcccgggaactcctggtctgcctggcatcaaggggcacagaggttatccagggcgtgac
ggtgcaaagggagagactggagctgttggtgctaagggtgaatctggttctcctggagag
agcggcgctcccggaccaatgggacctcgtggtttgcctggtgagagaggacgtcctgga
gccagtggagctgctggagctcgtggaaatgatggtctgcccggtcctgctggtccacct
ggccctgttggaccttccggagctccaggcttccctggctcgcccggtgcaaaaggagaa
gccggacctactggtgctcgtggacctgagggtgctcagggacctcgtggagagtctggt
actcctggatctcctggaccgtctggcgcttctggtaaccccggtactgatggcattcct
ggagcgaaaggatctgctggtgctcctggcatcgctggtgctcctggtttccctggacct
cgtgggcctcccgggcctcagggagccactggacctcttggtccaaagggaacatctgga
gacccgggtattccagggttcaagggagaggctggacccaagggagaaattggaccacct
ggtcttcagggaccaaatggcccacaaggagaagaaggcaagagaggacccagaggtgag
cctggttctgctggaccacggggaccccctggagagagaggagctcccggtaatcgtggt
ttccctggtcaagatggtctggctggtccaaagggagcccccggtgagcgtggaccctca
ggagccagcggtcccaaaggtgccagcggtgaccccggccgccctggagagcctggtctg
cccggtgccagaggtctgactggacgccccggtgatgctgggcctcaaggcaaagttgga
ccttctggagcacctggtgaggatggtcgtccaggacctcctggtccacagggagcccga
ggacagcctggagtcatgggattccctggaccgaagggagcaactggtgaacctggcaag
tctggtgagaaaggactggctggagctcctggtctgagaggtctgcccggcaaagatgga
gaaactggctcagctggaccccctggccctgctggtcctgctggagaaagaggagagcaa
ggacagcctggtccctctggcttccagggtcttcctggccctcctggtccacctggtgag
ggaggaaagcctggagatcagggtgttcctggagaggctggacctgctggtgccactgga
cctagaggagaacgtggtttccctggcgagagaggagccgctggctctcagggtctgcag
ggacccagaggtctgcctggaactcctggaactgacggacccaagggagcgattggacct
gctggcactgcaggagctcagggaccccctggcctgcagggtatgcctggagagagagga
ggtgctggtattcccggacccaaaggagacagaggagacgtcggagagaaaggacctgaa
ggtgctccaggcaaagatggtgccagaggtctcactggtcccattggtccccctggtcct
tctggtcccaatggtgagaagggtgaatctggtcctgctggtccttctggagctcctggt
gtccgcggtgctcctggtgacaggggtgagactggacctcctggaccggctggctttgct
ggacccccaggtgctgacggtcagcctggaaccaagggagagcagggagaacctggacag
aagggagatgctggtgctcctggaccccaaggaccatctggagcccctggacccgctggt
cccacaggtgtttctggacctaaaggtgctcgtggtgctcagggacctcctggtgccact
ggtttccctggagctgccggccgagttggaccccctggccccaatggtaatcctggacct
cctggtcctgctggtcctcccggtaaagatggacccaaaggcgtgaggggagatggtgga
cctccaggcagacagggtgatgctgggcttcgtggtcccgctggagcttccggagagaag
ggagatgctggagaggatggtccacctggcccacctggtccttcaggtcctcagggattg
gctggtcagcgcggtattgttggtctccctggacagcgtggcgagagaggtttcccgggt
ctgcctggaccttctggtgagcctggaaaacaaggagcttctggtggtcctggagaccgt
ggaccccctggacctgttggaccacctggactgactggacctgctggagagcctggcaga
gagggcacccctggatctgatggacctcccggtagagatggttctcctggaaataagggt
gagcgtggtaacactggtcctgctggtgctcctggtgctccgggcgctcctggtgctaat
ggcccagttggtcccactggcaaacagggagacagaggagagcctggtccacaaggacct
gctggatcttcaggacctgctggtgcccgaggaatgcctgggccccaaggaccccgtggt
gacaaaggggaggcaggagaggctggtgaaagaggacagaagggacaccgaggcttcact
ggtctgcagggtctccccggacctccaggtcaacctggagaccagggtgctactggacct
gctggacctgctggacaacgtggaccacctggacccgttggccctgctggaaaagacggt
acaaatggtctgcctggacccattggaccccctggaccccgtggtcgcagtggagagacc
ggtcctgctggtcctcctggaaaccccggaccccctggtcctcctggtcccccgggccct
ggcatcgatatgtctgccttcgctggtctgggtcagactgagaaaggccccgatcctctc
aggtacatgagagccgaccaggcttctggaaatctccgacagcatgatgctgaggtcgac
gccactctcaaatctctcaacaaccagattgagaacatccgcagccctgagggatccaag
aaaaaccctgctcgcacctgcagagacctgaaactgtgccaccctgactggaagagcgga
gagtactggattgatcccaatcaaggctgcactgtagatgctattaaggtcttctgcaac
atggagacaggggagtcctgcgtccaccccaagccttccagcatccctcgcaagaactgg
tggaccagcaagagcacggtccccaaacatgtctggttcggagagagcatgaatggagga
ttccactttaactatggcgatgacagcctggcgcccaacaccgccgccattcagatgacg
ttcctgagactgctgtccactgaggcttctcaaaacatcacctaccactgtaagaacagc
gtggcctacatggacggcgcgacaggaaacctgaagaaggccatgctgctgcagggctcc
aatgatgtggagatcagagccgagggcaacagccgtttcacttacgccgtgttggaagat
ggctgcacgagacacacaggaagatggggcaagacggtgattgaatacagatcacagaag
acctctcgtctgcccatcttagacattgcacccatggatatcggtggagcagaccaggag
tttggagtcgatgttggggcggtctgcttcttgtaa
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