| Entry |
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| Name |
(RefSeq) collagen alpha-1(II) chain isoform X1
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| KO |
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| Organism |
onl Oreochromis niloticus (Nile tilapia)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:onl00001]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100691930
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100691930
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:onl00536]
100691930
Glycosaminoglycan binding proteins [BR:onl00536]
Heparan sulfate / Heparin
Extracellular matrix molecules
100691930
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
LG5:5589607..5634041
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| AA seq |
1491 aa
MFSFMDSRTVLLLVASQVCLLAVVRCQVEDDQEDAFSCVQDGQRYNDKDVWKPEPCRICV
CDTGTVLCDEIVCEELKDCPKPEIPFGECCPICAADQPSTSGIPGVKGQKGEPGDITDVI
GPRGPPGPTGPPGEQGPRGSRGEKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGAPGPQGFQGNPGEAGEPGQS
GPMGPRGPPGPPGKPGDDGEAGKPGKSGERGPSGPQGARGFPGTPGLPGIKGHRGYPGRD
GAKGETGAVGAKGESGSPGESGAPGPMGPRGLPGERGRPGASGAAGARGNDGLPGPAGPP
GPVGPSGAPGFPGSPGAKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGASGNPGTDGIP
GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEIGPP
GLQGPNGPQGEEGKRGPRGEPGSAGPRGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPS
GASGPKGASGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGAR
GQPGVMGFPGPKGATGEPGKSGEKGLAGAPGLRGLPGKDGETGSAGPPGPAGPAGERGEQ
GQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGPAGATGPRGERGFPGERGAAGSQGLQ
GPRGLPGTPGTDGPKGAIGPAGTAGAQGPPGLQGMPGERGGAGIPGPKGDRGDVGEKGPE
GAPGKDGARGLTGPIGPPGPSGPNGEKGESGPAGPSGAPGVRGAPGDRGETGPPGPAGFA
GPPGADGQPGTKGEQGEPGQKGDAGAPGPQGPSGAPGPAGPTGVSGPKGARGAQGPPGAT
GFPGAAGRVGPPGPNGNPGPPGPAGPPGKDGPKGVRGDGGPPGRQGDAGLRGPAGASGEK
GDAGEDGPPGPPGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGGPGDR
GPPGPVGPPGLTGPAGEPGREGTPGSDGPPGRDGSPGNKGERGNTGPAGAPGAPGAPGAN
GPVGPTGKQGDRGEPGPQGPAGSSGPAGARGMPGPQGPRGDKGEAGEAGERGQKGHRGFT
GLQGLPGPPGQPGDQGATGPAGPAGQRGPPGPVGPAGKDGTNGLPGPIGPPGPRGRSGET
GPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQTEKGPDPLRYMRADQASGNLRQHDAEVD
ATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTVDAIKVFCN
METGESCVHPKPSSIPRKNWWTSKSTVPKHVWFGESMNGGFHFNYGDDSLAPNTAAIQMT
FLRLLSTEASQNITYHCKNSVAYMDGATGNLKKAMLLQGSNDVEIRAEGNSRFTYAVLED
GCTRHTGRWGKTVIEYRSQKTSRLPILDIAPMDIGGADQEFGVDVGAVCFL |
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| NT seq |
4476 nt +upstreamnt +downstreamnt
atgttcagctttatggattccaggactgtactgctacttgtagcgagccaagtttgtcta
ttagccgttgtgagatgtcaggtggaagacgaccaagaggacgcgtttagctgtgtacaa
gatggacagcgttataatgacaaggatgtgtggaaaccagagccttgtcgcatctgtgtg
tgtgacactggaaccgtcctgtgtgatgaaattgtctgcgaggagctaaaagactgcccc
aaacctgaaatcccatttggagagtgttgccccatctgtgctgctgaccagccttcaacc
tctggaatacctggtgttaagggccagaaaggcgaacccggagacattacggatgttata
ggaccaagaggaccacctggcccaacgggcccgccaggagagcaaggaccccgaggatca
agaggagagaaaggagagaagggaagtcctggcccccgtggcagagatggcgagcctggc
acccctggaaaccctggcccccctggacctccaggacctaatggaccccctggccttggt
ggaaactttgctgctcagatggctggtggttttgacgagaaggccggcggcgcacaaatg
ggtgtaatgcaaggaccaatgggccctatgggacctagaggaccacctgggccaactgga
gcacctggtccacaaggtttccaaggtaatcctggagaagctggagagcctggacaatca
ggacccatgggaccccgcggcccccctggacctcctggaaaacctggagatgatggtgaa
gctggcaaacctggtaaatcaggtgagcgtggaccttcgggacctcagggagctcgtgga
ttcccgggaactcctggtctgcctggcatcaaggggcacagaggttatccagggcgtgac
ggtgcaaagggagagactggagctgttggtgctaagggtgaatctggttctcctggagag
agcggcgctcccggaccaatgggacctcgtggtttgcctggtgagagaggacgtcctgga
gccagtggagctgctggagctcgtggaaatgatggtctgcccggtcctgctggtccacct
ggccctgttggaccttccggagctccaggcttccctggctcgcccggtgcaaaaggagaa
gccggacctactggtgctcgtggacctgagggtgctcagggacctcgtggagagtctggt
actcctggatctcctggaccgtctggcgcttctggtaaccccggtactgatggcattcct
ggagcgaaaggatctgctggtgctcctggcatcgctggtgctcctggtttccctggacct
cgtgggcctcccgggcctcagggagccactggacctcttggtccaaagggaacatctgga
gacccgggtattccagggttcaagggagaggctggacccaagggagaaattggaccacct
ggtcttcagggaccaaatggcccacaaggagaagaaggcaagagaggacccagaggtgag
cctggttctgctggaccacggggaccccctggagagagaggagctcccggtaatcgtggt
ttccctggtcaagatggtctggctggtccaaagggagcccccggtgagcgtggaccctca
ggagccagcggtcccaaaggtgccagcggtgaccccggccgccctggagagcctggtctg
cccggtgccagaggtctgactggacgccccggtgatgctgggcctcaaggcaaagttgga
ccttctggagcacctggtgaggatggtcgtccaggacctcctggtccacagggagcccga
ggacagcctggagtcatgggattccctggaccgaagggagcaactggtgaacctggcaag
tctggtgagaaaggactggctggagctcctggtctgagaggtctgcccggcaaagatgga
gaaactggctcagctggaccccctggccctgctggtcctgctggagaaagaggagagcaa
ggacagcctggtccctctggcttccagggtcttcctggccctcctggtccacctggtgag
ggaggaaagcctggagatcagggtgttcctggagaggctggacctgctggtgccactgga
cctagaggagaacgtggtttccctggcgagagaggagccgctggctctcagggtctgcag
ggacccagaggtctgcctggaactcctggaactgacggacccaagggagcgattggacct
gctggcactgcaggagctcagggaccccctggcctgcagggtatgcctggagagagagga
ggtgctggtattcccggacccaaaggagacagaggagacgtcggagagaaaggacctgaa
ggtgctccaggcaaagatggtgccagaggtctcactggtcccattggtccccctggtcct
tctggtcccaatggtgagaagggtgaatctggtcctgctggtccttctggagctcctggt
gtccgcggtgctcctggtgacaggggtgagactggacctcctggaccggctggctttgct
ggacccccaggtgctgacggtcagcctggaaccaagggagagcagggagaacctggacag
aagggagatgctggtgctcctggaccccaaggaccatctggagcccctggacccgctggt
cccacaggtgtttctggacctaaaggtgctcgtggtgctcagggacctcctggtgccact
ggtttccctggagctgccggccgagttggaccccctggccccaatggtaatcctggacct
cctggtcctgctggtcctcccggtaaagatggacccaaaggcgtgaggggagatggtgga
cctccaggcagacagggtgatgctgggcttcgtggtcccgctggagcttccggagagaag
ggagatgctggagaggatggtccacctggcccacctggtccttcaggtcctcagggattg
gctggtcagcgcggtattgttggtctccctggacagcgtggcgagagaggtttcccgggt
ctgcctggaccttctggtgagcctggaaaacaaggagcttctggtggtcctggagaccgt
ggaccccctggacctgttggaccacctggactgactggacctgctggagagcctggcaga
gagggcacccctggatctgatggacctcccggtagagatggttctcctggaaataagggt
gagcgtggtaacactggtcctgctggtgctcctggtgctccgggcgctcctggtgctaat
ggcccagttggtcccactggcaaacagggagacagaggagagcctggtccacaaggacct
gctggatcttcaggacctgctggtgcccgaggaatgcctgggccccaaggaccccgtggt
gacaaaggggaggcaggagaggctggtgaaagaggacagaagggacaccgaggcttcact
ggtctgcagggtctccccggacctccaggtcaacctggagaccagggtgctactggacct
gctggacctgctggacaacgtggaccacctggacccgttggccctgctggaaaagacggt
acaaatggtctgcctggacccattggaccccctggaccccgtggtcgcagtggagagacc
ggtcctgctggtcctcctggaaaccccggaccccctggtcctcctggtcccccgggccct
ggcatcgatatgtctgccttcgctggtctgggtcagactgagaaaggccccgatcctctc
aggtacatgagagccgaccaggcttctggaaatctccgacagcatgatgctgaggtcgac
gccactctcaaatctctcaacaaccagattgagaacatccgcagccctgagggatccaag
aaaaaccctgctcgcacctgcagagacctgaaactgtgccaccctgactggaagagcgga
gagtactggattgatcccaatcaaggctgcactgtagatgctattaaggtcttctgcaac
atggagacaggggagtcctgcgtccaccccaagccttccagcatccctcgcaagaactgg
tggaccagcaagagcacggtccccaaacatgtctggttcggagagagcatgaatggagga
ttccactttaactatggcgatgacagcctggcgcccaacaccgccgccattcagatgacg
ttcctgagactgctgtccactgaggcttctcaaaacatcacctaccactgtaagaacagc
gtggcctacatggacggcgcgacaggaaacctgaagaaggccatgctgctgcagggctcc
aatgatgtggagatcagagccgagggcaacagccgtttcacttacgccgtgttggaagat
ggctgcacgagacacacaggaagatggggcaagacggtgattgaatacagatcacagaag
acctctcgtctgcccatcttagacattgcacccatggatatcggtggagcagaccaggag
tttggagtcgatgttggggcggtctgcttcttgtaa |
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