KEGG   Oreochromis niloticus (Nile tilapia): 100692220
Entry
100692220         CDS       T06104                                 
Symbol
wdr48
Name
(RefSeq) WD repeat-containing protein 48 isoform X1
  KO
K15361  WD repeat-containing protein 48
Organism
onl  Oreochromis niloticus (Nile tilapia)
Pathway
onl03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:onl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    100692220 (wdr48)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:onl03400]
    100692220 (wdr48)
DNA repair and recombination proteins [BR:onl03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   FA (Fanconi anemia) pathway
    Other FA pathway factors
     100692220 (wdr48)
SSDB
Motif
Pfam: WD40_Prp19 DUF3337 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 EIF3I Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_SCAP Beta-prop_SPT8 Beta-prop_EIPR1 Beta-prop_DCAF12 ANAPC4_WD40 WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_DCAF4 WD_LRWD1 Beta-prop_Vps41 WD40_RFWD3 Beta-prop_IP5PC_F WDR54 Beta-prop_NUP159_NUP214 RAWUL WD40_like Tfb2_C
Other DBs
NCBI-GeneID: 100692220
NCBI-ProteinID: XP_003457470
Ensembl: ENSONIG00000015628
UniProt: A0A669EIF0
LinkDB
Position
LG18:complement(7353585..7362968)
AA seq 677 aa
MATHHRQNAAGRRKVQVSYVIRDEVEKYNRNGVNALQLDPALNRLFTAGRDSIIRIWSVY
QHKQDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYV
KALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQMG
TVIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKSLLLNRDGTQCLSGSSDGTIRLWSLG
QQRCIATYRVHDEGVWALQVNEAFTHVYSGGRDKKIYCTDLRNPDIRVLICEEKAPVLKM
ELDRSADPPPAIWVSTTKSSVNKWSLKGMHNFRSSGEYDNDCTTPLTPLCTQPEQVIKGG
ASIIQCHILNDKRHILTKDTNNNVAFWDVLKACKGEDLGKVEFDEEIKKRFKMVYVPNWF
SVDLKTGMLTITLDESDCFAAWVSAKDAGFSSSDGSDPKLNLGGLLLQALLEFWPRTRIN
PMDEEENEVNHVNGEQENRVQKGNGYFQVPPHTPVIFGEAGGRTLFRLLCRDSGGETESM
LLNETVPQWVIDITVDKNMPKFNKIPFYLQPHSSSGAKTLKKDRLSASDMLQVRKVMEHV
YEKIINLDNESQTTSSSANDKPGEQEKEEDMAMLAEEKIELMCQDQVLDPNMDLRTVKHF
IWKSGGDLTLHYRQKST
NT seq 2034 nt   +upstreamnt  +downstreamnt
atggccacgcatcacaggcaaaatgctgctgggcggaggaaagtacaggtatcatatgtc
attagagatgaggtggagaagtacaatcgaaacggggtgaatgcactccagctcgaccct
gctctgaaccggctcttcactgcagggagggactccatcatccggatatggagcgtctac
cagcacaaacaggacccgtacattgcatcgatggagcatcacacagactgggttaatgac
atagtcctctgttgcaatggaaaaactttgatatctgcctcatcggatacaacagtcaaa
gtatggaacgcacacaaagggttttgtatgtcaacgttacgaacacataaggactacgtg
aaagcgttggcttacgctaaggacaaagagctggtagcatcagcaggtctggacaggcag
atctttctttgggatgtgaacacactaacagcactcactgcttccaacaacactgtcacc
acttcatcactgagtgggaacaaggactcaatctacagtctggctatgaaccagatgggc
acggttattgtatcaggatccacagaaaaggttctgagagtgtgggatcctcgaacgtgc
gctaagctcatgaagctaaaaggtcacacggacaacgtcaaatcgttgctgctgaatcga
gacggcactcagtgcctatcaggcagttcagatgggaccattcgcctttggtccctcggc
cagcagaggtgcatcgccacctaccgtgtgcacgacgaaggggtgtgggccctgcaggtc
aatgaggcctttacgcacgtatattctggaggcagagacaaaaagatctactgtacggac
ctgcgtaacccagacatccgcgtacttatctgtgaggagaaggccccagtgctcaaaatg
gaactggacagatctgcggacccacctccagcaatctgggtctccaccaccaagtcatcc
gttaataaatggtctctaaagggaatgcacaacttcagatcatcaggagagtatgacaac
gactgcaccacccctctgacaccactgtgtactcagccagaacaagtcatcaagggaggt
gccagtattattcagtgccacattctgaatgacaaaagacacatactcaccaaagacact
aacaacaatgtggctttctgggacgtcctaaaggcatgtaagggcgaagacttggggaag
gtggaatttgacgaagagattaaaaagcgcttcaagatggtctatgtgccaaattggttc
tctgttgatctgaaaactgggatgctcactatcactttggatgagagtgactgctttgct
gcctgggtgtctgcaaaggacgcagggttttcaagttccgatggatcggatccaaagttg
aacctgggcggactattgcttcaggctctgctggagttctggcccagaacccgaatcaac
cccatggacgaggaagagaatgaggtgaaccatgtgaacggagagcaagagaacagggtc
cagaaagggaacggatatttccaggtgccaccacacacaccagtcatctttggagaagcg
ggaggtagaactctttttaggttgctatgtagagattcaggtggagagaccgaatccatg
ctgctcaatgagacagtcccacagtgggttattgatataactgtagataaaaatatgccc
aagttcaacaaaatcccattctacctccagcctcattcttcctctggtgcaaaaactcta
aaaaaggatcgactgtcggccagtgacatgctccaggtgagaaaggtcatggaacatgtt
tatgagaagatcatcaacttggacaacgagtcacagaccaccagctcctcggccaacgat
aaacccggggagcaggagaaggaggaggacatggccatgctagctgaagagaagattgag
ctaatgtgtcaagaccaggtgctagatcccaacatggacctgcgaacagttaaacatttt
atctggaagagcggaggggacttgacacttcactataggcagaagtccacgtga

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