Oreochromis niloticus (Nile tilapia): 100692395
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Entry
100692395 CDS
T06104
Symbol
tnr
Name
(RefSeq) tenascin-R isoform X1
KO
K06252
tenascin
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl04510
Focal adhesion
onl04512
ECM-receptor interaction
onl04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100692395 (tnr)
04518 Integrin signaling
100692395 (tnr)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100692395 (tnr)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
onl00536
]
100692395 (tnr)
Glycosaminoglycan binding proteins [BR:
onl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100692395 (tnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_TEN
EGF_Teneurin
FN3_DSCAM-DSCAML_C
Fn3_PBP1
Fn3_Dep-1_3rd
EGF_Tenascin
Pur_ac_phosph_N
FN3_Tor_3rd
EGF_2
Fn3_Dep-1_2nd
Interfer-bind
Fn3_VIN3
DUF4998
Fn3_ROS1
DUF7949
GH101_dom-5
SPE9_EGF_3rd
DUF8011
Motif
Other DBs
NCBI-GeneID:
100692395
NCBI-ProteinID:
XP_025755944
Ensembl:
ENSONIG00000009896
LinkDB
All DBs
Position
LG18:complement(15654876..15850914)
Genome browser
AA seq
1446 aa
AA seq
DB search
MDRQKQQRIWGASTQGPTLKQSSPVCAFQVQSQGEIGYKRTKSSQRSFQWMVLFARAVSG
MPMARQHHQASVPTASWILVLALFLALQGAAHAAPSGDNRLVRTTRVRRQTPGGDLPPSD
SSANQTLREQPLVFNHVYNINVPLESLCSVDLDTSAPSGPGEGSRAELGSRPSVEGPVDP
NGATEYTEQTLDAESQVTFTHRINIPKAACGCPATATIQQLATRVEMLEREVSMLRAQCG
AGCCGEGSAMGRLDFVPGCSNHGSFSFDQCGCICEEGWTGKNCSEPRCPNDCSGQGVCVE
GECVCDRDFGGDNCSEPRCPSDCSGRGLCIDGECVCEESFTGEDCMVGRCLNDCSDQGLC
INGTCQCRPGYVGEDCSLVYCANNCSKKGICKEGFCVCQDGYAGDDCNSVAPAMNLKVRG
VTDQTIELEWEGSVVLTDFLVTYTPSTPGGVQLEIRIPGNTTTCTILELQAGMEYNINVF
AVINNTISVPASITVWTYLSSPDVLVFRSITETSVEVHWQPFYYSFDGWEISFIPKDNDG
GMTTQLPSTITSFVQTGLRPGEEYTVNLVALRDQGRSQPVTATVTTLIDGPTQLIVRDVS
DTVAFVEWTPPRAKIDQIVLRYGLVGGEGPRTTFRLQPTLSQYSLQVLRPGSRYEVTVSG
VRRGNESGSISTEFTTALSFFSEIDAPKNLRLVSKTSTTLELEWDNSEAEVESYQVVYST
LAGDQYDKVIVPRNEGATTKTTLTDLLPGTEYGIGISAMKGSNQSTPATMNARTTLDVPM
NLTVTASTDNTITLNWGIVLGPIDHYKVTYTSASGVTNELTVPKDINTTTLKDLEPGTEY
TITVAARRGRQQSSAATIDAFTGIRPVTHLYLSEVTSDSVSVAWSAPAPPAELFILSYSS
ADGTDTSKVTLHGSKTRSLIQGLLPSTHYTVSLITIQGDVASEPITASLTTGMDPPKEMM
VSDVTEDAVTISWIKPLAPFEYYKLSYQSARGRVDSVMIDSDVTNYTLSSLFPATEYEIS
LKAVRGSQESNVVSTSVFTAMDMPSELTALNITPQGALLRWNPPVSNVDNYVVTLTHNQV
TADTFLVEGNKQELQLSNLKPSTTYSVALYATKGPLTSGTVITNLQTPMDAPVNLTASEV
NHRSALISWQPPIAEIDNYMLTYKTPDGSRKELILDAEDTWIRLEGLAETTEYTVKLQAA
RGLDTSAVVSTTFTTGSRLFATPQNCAQHLLNGETLSGIYTIYINRDPSQGVQVYCDMTT
DEGGWIVFQRRQNGLTDFSRKWSDYRVGFGNLEDEFWLGLDNIQKIAAQGRYELRIDMRD
GQESVYANYDKFSIGDARNLYKLRIGEYNGTAGDSLSYHQGRPFSTKDRDNDIAVTNCAL
SYKGAWWYKNCHRANLNGKYGESRHSQGINWYHWKGHEFSIPFVEMKMRPFNFRSISSKR
RRSAPV
NT seq
4341 nt
NT seq
+upstream
nt +downstream
nt
atggaccgtcagaagcagcaaagaatatggggagcatcaacccagggaccaacactaaaa
caatcaagtccagtttgtgctttccaggtgcagagtcagggggagattggctacaagaga
acaaagtcctcacagagaagtttccagtggatggtactgttcgctcgggctgtttccggc
atgccgatggcacgacagcatcaccaggccagtgtgcccacagcaagctggatcctggtt
ttggctctgtttctcgctctacagggtgccgctcatgctgctccatcaggagacaacagg
ctggttcgtaccaccagagtgaggaggcagaccccagggggggatctgcccccctccgac
tcctcagccaaccagaccctgcgggagcaacctttggtctttaaccacgtctataacatc
aacgtacccttggagtctctatgctctgttgacttggacacctctgcaccatcgggccca
ggggagggttctcgtgctgagttgggatccagaccttctgtagagggtccagtggatcca
aatggagcaacagaatacacagagcaaacactggatgctgagagccaggtgacatttaca
caccgcatcaatatccccaaagcagcatgcggctgtccagcaacagccacaatccagcag
ctcgccaccagggtggagatgctagagagagaggtttccatgctcagagctcagtgtgga
gccggatgctgcggggagggctcggccatgggccgtttggactttgtcccaggctgcagc
aaccacggcagcttcagcttcgatcagtgcggctgcatctgcgaggaagggtggactggc
aaaaactgctccgagcctcgctgcccaaatgactgctccggtcaaggggtgtgtgttgaa
ggggagtgcgtgtgcgaccgtgactttggaggcgacaactgttcggagccgcgttgccct
tcggactgctcgggccgcggattgtgcatcgacggggagtgcgtgtgtgaggagtcattc
acaggtgaagactgcatggtcggaaggtgtctcaacgactgctcggaccaggggctgtgc
ataaacgggacgtgccagtgccggcctgggtacgttggagaggactgctcgctcgtctac
tgtgcaaacaactgcagcaagaagggaatctgcaaggagggcttctgcgtctgtcaggat
ggatatgctggagatgactgcaactctgttgcacccgccatgaacttgaaggttcgaggg
gtgacagatcaaaccatcgagctggagtgggaggggtcagttgtgctgacagatttcttg
gtgacctacacaccgagcacccccggaggtgtgcagctagagataaggattccaggcaac
acgactacctgcactatcttggagctccaagcaggcatggagtacaacatcaatgtgttt
gctgtcattaacaacactatcagcgttcctgccagtattactgtttggacctatctctca
agtccagatgttttagtcttcagatccatcacagagacatcagtggaggtccactggcaa
ccgttctactattccttcgatggatgggagattagcttcatccccaaggacaatgatgga
gggatgactacacagctgcccagcaccatcacatcgtttgtgcaaactggtctgaggcca
ggcgaagaatatacagtgaacctggtggcgctccgggaccaaggtcgaagccagccagtc
acagctactgtcacaacattgatcgatggtcccactcagctgattgtgcgcgacgtgtcg
gacacagtggcatttgtggagtggacgccaccgagggcaaagattgatcagattgtgttg
cgttacggcctcgtgggaggagaagggccacggaccaccttccgcctccagcccacactt
agccagtactctctgcaggtcctgcgtcctggctcgcgttatgaggtgacagtgagcggc
gtgagaagaggaaacgagagcggatccatttccactgaatttactaccgctttatcgttt
ttctcagagatcgatgcccccaagaacttgcgtctcgtgtccaagacctctaccacgctc
gagctcgaatgggataacagtgaagcagaggtggagagttaccaggtggtttatagcaca
ttagcaggagatcagtatgacaaagtcatcgtaccgcgcaatgagggagccactactaag
actactctcacagacctgcttccaggcacagagtacggcattggcatttctgccatgaaa
ggtagcaaccagagcacaccagccacaatgaacgccaggacgactctggatgtacctatg
aatctgactgtgacggcctctacggacaacaccatcactctgaattggggcatagtcctg
ggccccattgaccactacaaggtcacctacacatcagcctccggcgtcactaatgagctg
acggtgcctaaagacatcaacaccaccactttgaaggacctggagcctgggaccgagtac
accatcactgtagcagcaagaagaggaagacagcagagcagtgcggctaccatagacgcc
ttcacaggaatcagacctgtaacccacctctacttatcagaggtgacttcagactctgtg
tcagtggcgtggagcgccccagcaccgcccgctgaactcttcattctgagctacagctct
gccgacgggaccgacacctctaaggtgacactgcatggctccaagacgaggtcactgatc
caggggctgctgccgtccactcattacaccgtcagtctaatcacaatacagggggacgtt
gcgtcagagcccattacagcttcactcactacagggatggacccaccaaaagagatgatg
gtgtcggacgtcaccgaggacgccgtgacgatctcttggatcaaaccgctggctccgttt
gaatactataagctgtcctaccagtcggccagaggtcgagtagacagcgtgatgattgac
agcgatgttacaaactacaccctgtccagtctgtttcctgccacagaatatgagatcagt
ctcaaagctgtcagagggagtcaggagagcaatgttgtcagcacttccgtcttcacagcg
atggatatgccgtcggagttgacggccctcaacatcacccctcaaggagccctgctgagg
tggaatccacccgtgtccaatgttgacaactacgtggtgaccctcacacacaaccaggta
acggctgatactttcctcgtggaaggcaacaagcaggaactgcagctgtccaacctcaag
ccaagcaccacctactctgtagccctctacgccaccaaaggaccgctcacaagtggcacc
gtcatcaccaacctccaaacccccatggatgcacccgtgaacctgacagccagtgaagtg
aatcaccgcagtgctctcatttcatggcagccgcccattgcagaaatagacaactacatg
ctcacctacaagacacccgacggcagccgtaaagagctgattctcgatgcagaggacaca
tggattcgactggagggactggccgagactacagagtacaccgtcaagctccaggctgcg
aggggactagacaccagcgctgtagtctctaccacctttactacagggagtcgcctattt
gcgacacctcagaactgcgcccagcacctgctaaatggagagactctgagcggcatctac
accatttacatcaacagagaccccagccagggggtgcaggtgtactgtgacatgaccacg
gatgaaggaggctggattgtattccagcgtcgtcagaacggcctgacggacttttccagg
aagtggagtgactatcgcgtcggctttggaaacctggaggatgagttctggcttggttta
gacaacatccagaagattgctgctcagggccgttatgagctgaggattgacatgagggac
ggacaggagtcagtctacgccaattatgacaagttctccattggagatgcaagaaacctc
tacaagctcaggataggagagtacaatggcactgctggtgactctttgagctaccaccag
ggtcggcccttctcgacaaaagacagagacaatgacatcgctgtcactaactgtgccttg
tcatacaaaggagcctggtggtacaagaactgccaccgggctaacctcaatggcaaatac
ggcgagtccagacacagccagggtatcaactggtaccactggaaaggccacgagttctcc
attccctttgtggagatgaaaatgaggccgttcaatttccgcagcatcagcagcaagagg
aggcggtccgcccctgtatag
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integrated database retrieval system
