Oreochromis niloticus (Nile tilapia): 100692436
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Entry
100692436 CDS
T06104
Symbol
ddx41
Name
(RefSeq) probable ATP-dependent RNA helicase DDX41
KO
K13116
ATP-dependent RNA helicase DDX41 [EC:
5.6.2.7
]
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
100692436 (ddx41)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
onl03041
]
100692436 (ddx41)
Enzymes [BR:
onl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100692436 (ddx41)
Spliceosome [BR:
onl03041
]
Complex C
Other components
Complex C specific factors
100692436 (ddx41)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
zf-CCHC
Utp25_C
SecA_DEAD
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
100692436
NCBI-ProteinID:
XP_003445915
Ensembl:
ENSONIG00000017785
UniProt:
A0A669EFF5
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Position
LG2:28392335..28400606
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AA seq
614 aa
AA seq
DB search
METENRPQKRSHDEDERTGSEGSEDDDYVPYVPVKIRKQQMLQKMLRLRGKAVDEEQKDS
GEEQRDEDEALGPRSHISLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMS
VKEMAKGIIYDDPIKTSWKAPRYILNMPDTRHERVRKKFHILVDGDGIPAPIKSFREMKF
PPAILKGLKKKGIVHPTPIQIQGIPTVLSGRDMIGIAFTGSGKTLVFTLPIIMFALEQEK
RLPFFKREGPYGLIICPSRELARQTHGIIEYYCKLLEEEGAPQLRTALCIGGMSVKEQME
VVKHGVHMMVATPGRLMDLLQKKMVGLDICRYLALDEADRMIDMGFEEDIRTIFSYFKGQ
RQTLLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVIQEVEYVKEEAKMVYLLECL
QKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFKEGKKDVLVA
TDVASKGLDFPAIQHVVNYDMPEEIENYVHRIGRTGRSGKTGIATTFINKGCDESVLMDL
KALLVEAKQKVPPVLQVLQTGDETMLDIGGERGCTFCGGLGHRITDCPKLEAMQTKQVTN
IGRKDYLAHSSMDF
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggagaccgaaaaccgacctcaaaagagatcccatgacgaggatgaaaggactggctca
gaaggatcggaggatgacgactacgttccatatgttccagtcaaaatccgaaaacagcaa
atgctacaaaagatgttgcgcttgcgagggaaggcagtggatgaagaacagaaggacagt
ggggaggaacagagggatgaagatgaggctcttggtccacgctcccacattagtctcctc
gaccagcatcaacacctcaaggaaaaggcagaagctcggaaggagtcagccaaggagaag
cagctgaaagaggaggagaagatcctggagagtgttgcagagggcagagctctgatgtct
gtgaaggaaatggccaaaggtatcatatatgatgatcctataaaaacaagctggaaagca
ccacgctacatcctgaatatgccagacaccagacatgaacgcgtcaggaagaaatttcac
atcctggttgatggcgatggcattcctgctcctatcaaaagcttcagagagatgaagttt
ccaccagcaattctgaaaggtttgaaaaagaagggaatcgtccacccaacaccaattcaa
atacaaggaatcccaacagttctttcaggtagagacatgattggaatcgccttcactgga
tcaggaaagactttggtcttcactctgccgatcatcatgtttgcgctggagcaggagaaa
agactgcctttctttaagagagagggaccgtatgggcttatcatctgtccttcacgagag
ctggcgaggcagacacatggcatcatagagtattactgcaagctgctggaggaggaggga
gctcctcagctgcgcacagccctctgcatcggaggaatgtctgtcaaggagcagatggag
gtagtaaaacacggtgtccatatgatggttgctacccctggaagattgatggacttgctg
cagaagaagatggtgggtctggacatctgtcgctacttggctttggatgaagctgacagg
atgatagatatgggttttgaagaagacatccgaaccatcttctcttacttcaagggtcaa
agacaaaccctgcttttcagtgccactatgcccaagaaaatccagaactttgccaagagc
gcactggtcaaacccattactattaacgtgggcagagcaggagctgccagcttggatgtc
atccaggaagtggagtacgtcaaagaagaggctaagatggtgtacctcttagagtgtctc
cagaaaacgcctcctccagtgctgatatttgctgagaaaaaggcggatgtcgatgccatc
catgagtatctgctgcttaaaggagtagaggcagtggccatacatggtggaaaagatcaa
gaggaaagaacaaaagccattgaagcattcaaagaaggaaaaaaagatgtgttagtggcc
accgatgttgcctccaagggtctggatttcccagctattcaacatgtagtgaactatgac
atgccagaagagatagaaaactatgtccacagaataggaagaactggacgatcgggcaaa
actggaattgccacaacgttcatcaataaaggctgcgatgaatccgttctgatggatcta
aaagctctgcttgttgaagccaagcagaaagttcctccagttctccaggtactccagacc
ggagacgagaccatgctggacatcggaggcgagagaggatgtacgttctgtggtggtctt
ggtcatcgtattacagactgtcccaagctggaggccatgcagaccaagcaggtcaccaac
attggaaggaaagactacctggctcatagctcaatggacttctaa
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