Oreochromis niloticus (Nile tilapia): 100693655
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Entry
100693655 CDS
T06104
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03013
Nucleocytoplasmic transport
onl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100693655
03015 mRNA surveillance pathway
100693655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
onl03019
]
100693655
Enzymes [BR:
onl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
100693655
5.6.2.5 RNA 5'-3' helicase
100693655
Messenger RNA biogenesis [BR:
onl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100693655
mRNA cycle factors
Common to processing body (P body) and stress granule
100693655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
NPHP3_N
nSTAND3
NAT10_TcmA_helicase
DEAD
SRP54
UvrD-helicase
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
100693655
NCBI-ProteinID:
XP_003437806
Ensembl:
ENSONIG00000010452
UniProt:
I3JW92
LinkDB
All DBs
Position
LG18:11679655..11691933
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AA seq
1109 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDGQVNG
PDGVLQNGDDPVVKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEIPHIFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
TINPGGRFMSTAMYDAREALIPGSVYDRSSNGRSSNMYFQTHDQIGMIGTGPSPMSSMNI
PIPFNLVMPPIPPPGYLGQVNGPTAGRGGGLKGKSGSGGGGGTRGGRQRNRGNHSGGTDR
GQHGGQMTTSQTSQDQGSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFK
SQIDVALSQDSTYQGERAYHGGVTGLSQY
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgaggcgtacgggccgagctcgcagactctaacgttcctggacaccgaggaa
gccgagctgctgggagcggacactcagggctccgaatacgacttcaccgattttaccctg
ccgagccagacccagactcaaggccaaacccagagtcagctagacggccaggtcaatggc
cctgatggtgtgttacagaatggagacgaccctgttgtgaaggccagccaattactggca
gagttgaactttgaggaagatgaggaggacacttactataccaaggaccttcctgtgcat
gcttgcagttattgtgggattcacgatccagcctgtgtggtctactgcaacaccagcaag
aagtggttttgtaatggccgtggaaacacttctggcagccacattgttaaccacctggtg
agggcaaagtccaaggaggtgaccctgcataaagatggccccctgggggaaacagttttg
gagtgctacaactgtggctgtcgcaacgtcttcttgcttggcttcattcctgccaaggct
gactcagttgtggtgttactgtgcaggcaaccgtgtgctagccagagtagcctgaaagac
atcaactgggacagctcacagtggcagcctttaatccaggaccgctgctttctttcctgg
ttggtcaaaattccctcagagcaggagcagctccgggcacgccagatcactgcccagcag
atcaacaagctggaggagctgtggaaggaaaatcccacagcaaccttggaggacctggaa
aagcctggagtagatgaggagccccaacatgtcctgcttcgctatgaggatgcctaccag
taccaaaacatttttggtcctcttgtgaagctggaagctgactatgataagaaactcaaa
gagtcacagacacaagacaacatcacagtaagatgggacttgggcctgaataagaagagg
attgcttatttcacccttcccaagacagactcagatatgcggctgatgcagggagatgaa
atttgcctgagatacaaaggagacctggcccctccttggaaaggcattggacatgtcatc
aaagtccctgacaattatggtgatgaaatagccatcgagttaaggagcagtgccggggct
ccagtggagatccctcacatctttcaggtggactttgtgtggaagtccacttcatttgat
aggatgcagagtgctctgaagacatttgctgtggatgagacttcagtgtctggttacatc
taccacaaactgctgggacatgaggtagaggatgtggtcatcaagtgccagctgcccaaa
cgcttcaccgctcaaggcctgcctgaccttaaccactcccaggtgtacgctgtgaaaaca
gtgctgcagcgccccctcagtctgatccagggcccacctggcacaggaaagacggtcacc
tctgccaccattgtgtaccacctggccagacaaggaaatgggcctgtgctggtttgtgct
cccagtaatattgcagttgatcagctcactgagaagattcaccaaacggggctcaaggtg
gtgagactctgtgccaagagcagagaggccatagactcaccagtgtcatttctggctctg
cacaaccagacccgtaatatggacagtatgccagagcttcagaaactccaacagctgaag
gatgagactggagagctgtcctcctcagatgagaagcgctacagagctctgaggcgcact
gctgagagagagttgcttatgaatgctgacgtgatctgctgtacctgcgttggggcagga
gatcctcgtctggcaaagatgcagttcagatccatcctgatcgatgagagcacccaggcc
accgagccagagtgcatggtgcctgtagtccttggagccaagcagttgattcttgtgggt
gatcactgccagctgggacctgtggtgatgtgtaagaaggcagctaaagcaggtctgtcc
cagtctctgtttgagcgtcttgtagttttggggatccgaccaatccgtctgcaggtccag
taccgcatgcacccggccctcagtgccttcccctccaacatcttttatgagggttctctg
cagaacggagtcactgccgcggaccgtgtgaaaaaaggcttcgacttccagtggccccaa
ccagacaagcccatgttcttctatgtcacccaaggccaagaggaaattgctagctctgga
acatcttatttgaataggactgaggcagccaatgtggagaaaataacaacgaggttgctg
aaggctggagcaaaacctgatcagattggtatcatcactccctacgagggccagaggtcc
tatctggtccagtacatgcagttcagtggctccctccacaccaaactctaccaggaggtg
gaaatagccagtgttgatgctttccaagggagagagaaagacttcatcatcctctcctgc
gtgagggccaacgagcaccagggcatcggcttcctcaatgatcccagacgtcttaacgtg
gcactcaccagggccagatatggcgtgatcattgtgggaaaccccaaagccctgtccaag
cagcctctgtggaaccacctgctcaattactacaaggagcagaaggtcctggttgaaggc
ccgctcaacaacctgagggagagcctcatgcaattcagcaagccccgcaagctggtgaac
accatcaaccctggtggccgattcatgagcacagctatgtatgatgccagggaggccctc
attcctggatctgtttatgatcgtagcagcaacgggcgttcgtccaacatgtatttccag
acgcatgaccagatcggtatgattggcacagggcccagtcccatgtcctccatgaacatc
ccgatccccttcaaccttgtgatgcctccgattcctccaccagggtacttgggacaggtg
aatggacctacagcaggtcgcggtggcggtctaaagggcaaatcgggcagcggaggaggt
gggggaactcgaggtggccgtcaaagaaaccgtggaaaccacagcggtggaacagaccgc
ggacagcatggaggtcaaatgactacaagccagactagccaggaccagggctcccagccg
ttctcccagggccctctgacgcagggctacatcagcatgagccagccatcacagatgagc
cagcctgggctctcacagcctgaactctcccaggacagttaccttggagacgagttcaag
tcccagattgatgtggctttgtcccaggattccacgtaccagggggagcgggcctaccat
ggtggtgtgactggactgtcccagtactag
DBGET
integrated database retrieval system
