Oreochromis niloticus (Nile tilapia): 100693826
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Entry
100693826 CDS
T06104
Symbol
vps8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X5
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
100693826 (vps8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
onl04131
]
100693826 (vps8)
Membrane trafficking [BR:
onl04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
100693826 (vps8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
VPS8_N
zf_RING_Vps8
TPR_Vps41
Clathrin
WD40_CDC20-Fz
TPR_VPS8_2
zf-RING_UBOX
zf-RING_Vps41
zf_RING_Vps8_fungal
zf-RING_11
ANAPC4_WD40
Beta-prop_EML_2
zf-RING_2
zf-RING_5
zf-C3H2C3
WDR55
DUF1841
DUF5659
EIF3I
DUF3873
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
100693826
NCBI-ProteinID:
XP_003456728
Ensembl:
ENSONIG00000041015
LinkDB
All DBs
Position
LG13:30819948..30905863
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AA seq
1402 aa
AA seq
DB search
MSHSPDSHSLLSASSQLNLMEVDSIDDKEFDIPQVDTPPTLESILNELEDEEEPFVLEDT
CILNTDNMDAHSCETSSLASSDSGDPTHLKRRKRTVDMSSTVHGCVLRHSLLKGISAQIV
SAADKVDAGLPTAITVSGVIAVGTSHGLALVFDANQALRLCLGTKTTGAEFGAVSALSIN
HDCSRLLCGFAKGQITMWDLANGKLLRTITDAHPPGTAILHVKFTDDPTIAVCNDSGGSV
FELAFRRVMGMRSCDSRCLFSGSKGEVCCIEPLRSPPDFRDHPITHYSLLAMASLTKILV
IGLKPSLKVWMTFPYNKSDPSSVPQLAWQFVAVQKMVNPVLAFCKGDTVHFLLVKKEESG
TIHVIKQRQFQLSCDIISLSWINSRTLVLVDSHEKLHVVDRPSQEVLETLDLEQVQLVYN
SRHFKSLATGGNVSQALALVGEKACYQSVSSYSGQIVYLGTKSAHIMTLRNWRERIDCLM
KQEHFVEALSLAWSFHEGAAKAVVGLYGDSLKRKAVVSDKMIEILFQFAEHALKKCPEQG
KIQVMEQHFQDVVPVLVDYCLLLQRADLLFNQLYSRLVENMVAKAVFLESLESYIVADRV
GHLTPAIMRDLLDHYHSNGMMDSLERCIVHLDVTSLDIQQVVQVCWENQLYDAMIYVFNS
GTNDYITPMEKLFAVIGPTLKEGRSLTDENVVMGNKLLVYISCCLAGRAYPLGDIPEDLV
VQVKNQVFDFLIRLHSADSSEEEEVFPFIRTLLHFDTREFLNVLAMTFEDFKNDKQALEY
QQRIVDILLQVMVDNPDFTPSQVGGLFTFLARQLAKPDNTLFVNRKLFDQVLEFLCCPDD
DSRHTERQQVLLELLQVGGVVQFNEERLLMLAEKAKFYQICEFLYEKNHQYDMIIDCYLK
DPLRKWEIFNYIHNLLSMPGYSNEEKQRVKSKVLKHIKDVVTLDPSKSADLVLFHFTTEV
QQIISELQDDQLLFNFLNCLLESREGPHSGSILPQEGDLHELLLDLMCRFAPDQLLSFLH
TSQHYRLEEAIQITQKHHCNEATAYLLETKGDVHGAFAVLLETLKETLCALTAESDRGAK
DRRCDEDEAVRAESMLMKLKESVNDIIVFCHRSCQGLDQKQREVLWFPLLDTMMASQKQV
KGLNAKHTSDVLKELTMKVLNAMSSFISLPAIIQQILQDPVYGKGKLAEIQGLILGMLDT
FNYEQTLLETTTNLLNYDLHWSLAHLRAAVTRGLHPRQDCCNICLQQYKRRQDAAEEIIV
FSCGHLYHLQCLQQKDCVWGCASELQRQWRCYKCSAIHGGRVGPSTEPKRGRSTSLAQTH
VTSARQDTGASALRKKVFAEATLDLQQEQSWDEIRCLYRGPSRLSILSEVSHCHEKTGSL
FSVQPGTESFQLKLSPPPLFEE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcattccccggactcccacagcctactctctgcctcttcccagcttaacctgatg
gaagtggactcgattgatgataaggagtttgacattccacaagtggatacacctcccaca
ctggaaagcattctcaatgagctggaggatgaggaggaaccgtttgtactggaggacacc
tgcatcctaaacacagacaacatggatgctcactcctgcgagacctcctctctggccagc
tctgacagtggagacccaacacatcttaaacgaaggaagaggacagtggacatgagttca
acagttcatggatgtgtccttcgacacagcctgctgaagggcatctctgcacagatcgtc
tctgctgctgacaaagtggacgctggacttccaacagctataacagtgtcgggtgtcatt
gctgtgggaacatctcatggtctggctttggtctttgatgccaaccaggccttgcggctt
tgtctgggtaccaagacgactggagcagagtttggcgccgtctctgccctgagcatcaac
catgactgctcacgacttctctgcgggtttgccaaaggacagattacaatgtgggatcta
gccaatgggaagcttctgagaaccatcactgatgcccaccctcctgggacagccattctg
catgtgaagttcacagacgacccaactattgccgtgtgcaatgacagtggaggatctgtt
tttgaactggctttcaggagggtgatggggatgaggtcatgtgactctcgatgtctcttc
agtggttctaaaggggaggtgtgctgtatcgaacctttgcgttctcctccggacttcaga
gaccatcccatcacgcactactctctgcttgctatggcatctctcactaagattctagtc
attggattaaagccctccctgaaagtctggatgacatttccttacaataagtcggatcca
tccagtgttcctcagctggcctggcagtttgttgctgtccagaagatggtcaatccagtc
ctggctttttgcaaaggagatactgtccacttcctcttggtaaagaaagaggaatcgggg
acgatccatgtcatcaaacagagacaattccaactcagctgtgacatcatcagcctaagt
tggattaacagtcgtacgctggtcctggtggacagccatgaaaagctgcacgtggtggac
cggcctagccaagaggttttggagactctggacttggagcaggtgcaactggtctataac
agccgacatttcaaatcactggcaactggaggaaacgtctcccaggctctggctttagtt
ggagaaaaggcttgttaccagtcagtctccagctactcaggacagattgtgtatttgggc
accaagtcagctcacattatgactctgcggaactggagagagcgtattgactgtttgatg
aagcaggaacactttgttgaagccctctctttggcctggtcctttcacgagggagctgct
aaggctgtggttggcctgtatggagattctctgaagaggaaggcggtggtcagtgacaag
atgatcgagatccttttccagtttgctgagcatgctttgaaaaagtgtccagaacagggc
aaaatccaagtgatggagcaacatttccaggatgtagttccagtcctggtggattactgc
ctgctgctgcagagggctgacctcctctttaaccagctgtattcgcggctggtagagaat
atggttgctaaggctgtgttcttggagtcactggagtcgtacattgtagctgatcgtgtt
ggacacctcactccagccattatgagggacctcctcgaccactaccatagtaatggcatg
atggacagtctggagagatgcatcgtccacctagatgttaccagcttggacatacagcag
gtggttcaagtatgttgggagaaccagctctatgatgcaatgatctacgttttcaacagt
ggaacgaatgactacatcactccaatggagaaactctttgcagtgatcggtccaacactt
aaggaaggaaggagcctaacagatgagaacgtggtaatgggaaacaaactactcgtgtac
ataagctgttgtcttgcaggaagagcatatccacttggagatattccagaagaccttgtg
gttcaagtcaagaaccaggtttttgacttcctaatccgtctccactcagctgactcgtcc
gaggaagaggaagtttttccatttattcgtacactcctccactttgacaccagggaattt
ctcaacgttctcgccatgacatttgaagactttaaaaatgacaagcaggcccttgagtac
cagcagaggatagtggacatcttacttcaggtaatggtggacaacccagactttactccc
tcccaagtgggcggactcttcacctttttagctcgtcagttggccaaaccagacaacaca
ctgtttgtgaacaggaagctctttgatcaggtgctggagttcctttgttgtccggacgat
gattcccgacacactgaaaggcagcaggttctgctggagcttctgcaggtcgggggtgtg
gtccagtttaatgaagaaagactcctgatgctggcagagaaagccaagttctaccaaatc
tgtgaatttctttatgagaagaatcatcagtatgacatgatcattgactgctacctgaaa
gaccccctcagaaagtgggaaatctttaactacatccacaacctgctgtccatgcctgga
tacagcaacgaggaaaaacaaagagtcaagagcaaagtgctgaaacacataaaggacgtg
gtgacccttgaccccagcaaatcagctgacttagtgctgtttcatttcaccaccgaggtg
cagcaaatcatctctgagcttcaggatgatcagctgcttttcaatttcctcaactgcctc
ttggagtcgagggaaggccctcattcagggtccatcttacctcaagaaggtgacctccat
gagcttctgctggatttaatgtgccgctttgccccagaccagcttctgagctttctccac
acctcccagcactacagactagaagaagcaatacaaataactcagaagcaccactgcaat
gaagctacagcctacctgctggagaccaaaggagatgttcatggagcatttgctgtctta
ttagagacactgaaggaaacactgtgtgctcttactgctgagagtgacagaggagcaaag
gacaggagatgtgacgaggacgaggctgtaagagccgaatcgatgctgatgaaattaaag
gaatctgtgaatgacatcattgtcttctgtcatcgaagttgtcagggccttgaccagaaa
cagagagaggttctctggtttccacttctggacacaatgatggcatctcagaaacaagta
aaggggctcaatgctaaacacacctctgacgtgctgaaggagctcacaatgaaggttctc
aacgctatgagcagctttatttctttgcctgccatcattcaacagatcctgcaggatcca
gtgtatggcaaaggcaagctggcggagattcaaggcctcattctgggtatgctggacacg
tttaactatgaacagactttacttgaaacaaccaccaatctgttgaactacgacctccac
tggtccctggctcacctgcgtgctgctgtcacaagaggactccacccacgacaagactgc
tgtaacatctgcctccagcagtacaagaggaggcaggatgcagctgaggagatcattgtt
ttcagctgtggtcacctataccacctgcagtgcctgcagcaaaaggattgtgtgtggggc
tgtgcttcagagctgcaacggcagtggaggtgctacaaatgttcggccatccacggagga
agagtcgggccttccactgaaccaaagagaggccgtagcacatctctggcacagactcac
gtgacatcagcacgccaagacacaggagcgtcggctctgaggaagaaggtgttcgctgag
gcaacactggaccttcagcaggaacagtcctgggatgaaatccgctgcttataccgagga
ccatccaggttgtccatcctttcagaagtctcccactgccacgagaaaacaggatctctg
ttctctgtccaaccaggaacagagagtttccaactgaaactctcccctccgcctctcttt
gaagaataa
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integrated database retrieval system
