Oreochromis niloticus (Nile tilapia): 100694254 Help Entry 100694254         CDS       T06104                                  Name (RefSeq) collagen alpha-1(XXVII) chain A   KO K19721   collagen type V/XI/XXIV/XXVII, alpha Organism onl  Oreochromis niloticus (Nile tilapia) Pathway onl04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:onl00001]  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     100694254  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:onl00536]     100694254 Glycosaminoglycan binding proteins [BR:onl00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    100694254 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI Laminin_G_2 Motif Other DBs NCBI-GeneID:  100694254 NCBI-ProteinID:  XP_019217540 LinkDB All DBs Position LG7:complement(16433008..16497386) Genome browser AA seq 1721 aa AA seqDB search MYRTDRDVDILQKLGLKGERTSRSLPAGVIPFRSGIILNQRAHIEAPLRSIFPPAIWPNL TLVLSVRSHRINSAFLFTLLSDDKKLLLGLQLVPGNLVLHTGPNTSVALPYEPHDGQWHQ LGLGINGQRVTLYASCGGQSVHADFGWDSEKGLAPELHGSLLLGRTSQQQTSAHFEGAIC QFDLVPSAQAAHNYCRYIKKQCREADTYRPNLSPLLPIVPRERNITATAATPKRGGPVTA RKTTGFSLARSAAAAASAVRYVAPAQTIKPNQGTIIPTPLLGTVIPVTDQVGLVSPPLKT RTSTVATPLRTGAPPTKPSTHSIKTQSNKTHSLKTHSLKTHPLKTTQKNARVGTSNSKKP TIPVSTSTKPSKTKPKPALLDQGAVPKKPQPTRASKTPPKSKVTSSKATPSKPKPDSLKD APFKPTASKVNRSKSATPKPTAAKTPKPTKQPITTKAPVTPRPTKPSYNPVTPPATDGFQ SWEVPPTQFSMLVETKGEKGDIGPQGLPGPPGKPGVPGKRGPRGPPGPHGNPGRPGPPGL KGNKGDPGISPGPAPKGEKGDSGIIGPVGMIGQPGRKGQKGFPGQPGLPGEPGEQGPVGS PGAKGYPGRQGLPGPIGPMGPKGVRGFIGIPGLFGLPGPDGERGIPGEPGKRGKMGRPGF PGDFGERGPPGPDGEPGNMGAPGPNGVPGLIGDMGPVGQIGPPGPNGLKGVPGNPGEPGL KGDKGEIGIPGEQGEIGFKGDKGVQGAPGLPGIHGKPGPQGKPGEKGPDGTPGPPGPEGF PGDMGPPGENGLEGPKGKPGARGLPGPRGIPGLEGDEGPIGPPGLTGLEGRMGRQGFPGI LGTEGVKGEPGITGKVGPMGERGLVGFIGPVGEAGLAGEKGDRGEMGLPGPPGEKGPTGH PGAPGEAGPTGPPGRPGPPGATGPTGTRGPKGLRGAKGPDGPAGEIGLEGKKGPDGPPGK LGFPGPQGKQGEPGETGPKGFSGIQGPSGSPGDKGIAGEPGPAGPRGTIGPLGETGQKGP PGKAGEPGLPGEPGEKGAIGLPGNIGEQGLIGQRGEPGLEGEAGPAGPDGTKGEKGDMGQ EGDKGEKGETGQKGKEGPPGSPGFTGVRGPEGKPGKIGERGKPGSKGAKGNQGHLGETGP VGKTGPPGFVGPKGSRGTIGHVGAPGRMGQQGEPGIAGYEGHQGPQGPIGPPGPKGEKGE QGDDGKVEGPPGPPGDMGPPGDRGERGEPGDPGYKGQIGVDGERGRPGAPGLPGHPGPQG QQGPKGAKGDQGQKGKQGQAGPKGARGPEGVGGPSGPRGVVGREGQEGVPGVDGVPGKDG SKGIPGEHGDDGEAGLPGKAGSSGKTGVPGLPGDQGAFGPKGERGLPGQSGPPGKRGFKG GMGLPGPQGDKGPKGQPGDTGEPGFPGVLGVFGPRGPPGDFGPKGIRGPKGPQGSVGRRG IVGPVGIIGPNGRAGPRGQKGNRGETGAQGPRGSPGPPGRPGPPGVPLSFKEDGVLFMDL STPLRTENKPVMDLPMLDQGAEIFKTLHYLSNLIQSLKNPLGTRTNPARICRDLHSCEQK LNDGTYWIDPNLGCMSDTIEVTCNFTGGGQTCLKPVTVSKPTVSVGRVQMNFLHLLSSEA VQHVIIHCLDVSIWRSAEDQPVEQGSVKFKAWSGEVFEVGGELEPEVLEDSCWIKDGRWH QTHFVFHSLDPTLLPVVDIYNLPKASPGSHYHLEVSPVCFL NT seq 5166 nt NT seq  +upstreamnt  +downstreamnt atgtacagaacagatagagatgtggacattctccaaaagttggggcttaagggagagagg acgtcacgcagtctgccggcaggagtcattccgttcagatcggggatcatcctcaaccag cgggcgcatattgaggctccattgcgatcaatctttcctccggccatctggcctaacctc acgctggtcctgagtgtacgctctcaccgtatcaacagcgctttccttttcaccctgctc tcagacgacaagaagctgcttcttggtctacagcttgtaccgggaaacctggtcctacac acgggaccaaatacctctgtggcactgccctatgagccccacgatggccagtggcaccag ctgggtctgggaattaatggacagagagtgactctatatgcctcctgcggagggcagagt gttcatgcagactttgggtgggacagtgagaaggggctggctccagagctccatggctcg ctgctgctggggaggacaagccagcagcaaacttcagcacactttgaaggagccatttgc cagtttgatctggtcccttctgcacaggcagctcacaactattgcaggtacattaagaaa cagtgcagggaagctgacacatacaggcctaacctttctcctttgctgcctatcgtaccg agagaaagaaacatcacagctactgctgctacccctaaacgtggtggcccagtaaccgcc aggaaaaccacagggttcagccttgccaggagcgctgctgctgcagcctcagctgtcaga tatgtggcccccgcccaaacgataaaaccgaaccaagggaccatcatcccaacgcccctg ttgggaactgtgataccagttacagaccaagttggtttggtttcaccacctctcaagacc agaaccagcactgtcgcaacaccactcaggacaggagcaccacccacgaaaccatcaacg cactccatcaaaacccagtccaataaaacccactccctcaaaacccactccctcaaaacc caccccctcaaaacaacccaaaaaaatgcaagagtgggaacaagcaattcaaagaaacct acgataccagtcagtaccagcaccaaaccctccaagacaaagcctaaacctgcattatta gaccaaggtgcagtcccaaagaaaccccaacccaccagagccagtaaaacacctcccaag tctaaagttacatcatcgaaagccactccgtccaaacccaaaccagattctctaaaagat gctccttttaaaccaacagcatcaaaggtcaaccgctcgaaatcagccacccccaaacct acagctgctaaaacccctaagccaacaaagcaacccataaccaccaaggccccagtcacc ccaagacctactaagccttcatacaacccagttacaccacctgctactgatggcttccag agctgggaggtgccacctacgcagttctccatgctggtagaaactaagggagagaaagga gatataggaccgcaggggctgcctggacctcctgggaagccaggcgtgccaggcaagagg ggtcctcggggcccccctggtccacatggaaaccctgggagacccggtccacctggactc aagggcaacaaaggtgaccctggcatctcacctggaccagcacctaaaggagagaaggga gactcagggatcattggcccagttggaatgattggccagccaggtcgaaagggacagaaa ggtttccctggccaacccggactccctggagagcctggtgagcaaggtccagtcgggagc ccaggtgccaaaggttatcctggcaggcagggtttacctgggcctataggaccaatgggg cctaaaggcgttcggggtttcattggaatcccaggcctttttggcctgcccggtcctgat ggcgaaagaggtatacccggcgaaccagggaagaggggcaagatgggtaggccggggttt cctggggactttggggagagaggaccacctgggcctgatggagagccaggtaacatggga gcccccggtccaaacggagttcctggacttattggagacatgggacctgtgggacagatt ggcccgccaggacctaatggactgaaaggggtgcctggaaatccaggagaaccaggactg aaaggtgataagggtgaaattgggattcctggagagcaaggggagattggattcaaagga gacaagggtgtccagggggctccaggtttaccaggcatccatgggaaaccaggaccacag ggaaagccaggagagaaaggtcccgacggtacccccggacctccgggccctgagggtttt cctggtgacatgggaccaccaggagagaacggccttgaaggaccaaagggaaaaccaggg gctagaggtttaccaggcccacgaggaatccctggcttggagggagacgagggccctatt ggaccaccgggcctaacaggactcgagggtagaatgggcaggcaaggattccctgggata ctcggtacagagggagttaagggagagcccggcatcactggaaaagttggacccatggga gagagaggcttggtgggcttcattggacctgtgggagaggcgggactggcaggagagaag ggagatcgaggggagatgggccttcctggaccacctggagaaaagggaccaacgggtcac ccgggggcaccgggtgaggccggacctactggaccaccaggaagaccaggccctcctgga gcgactgggccaactggtaccagagggcctaaaggcttgcggggagcgaaagggcctgac ggtccagctggagagattggattagagggcaagaagggtcctgatggtcctccaggaaaa ttaggtttccctggaccgcagggaaagcaaggagaaccaggagaaaccggacctaaagga ttttctggtatccaggggccttctggatctccaggggacaagggaatagcgggcgagcca ggaccggcagggccacgtgggactatcggacctttgggagagactggtcaaaaaggtcct ccaggaaaagcgggtgaaccaggactgccaggcgagccaggggagaagggagccattgga cttcctgggaatatcggagagcagggactaataggacagcggggagagccaggtctagag ggagaagctggtccagctggtcctgatggaaccaagggggaaaaaggtgacatgggtcag gagggtgacaaaggagaaaaaggtgaaaccggacaaaagggaaaggagggcccacctgga agtcctggattcactggtgtcaggggtccagaagggaagcctggcaaaattggggaacga ggcaaaccagggtcaaagggtgccaaaggtaatcaaggtcacctcggggagactggacca gtggggaagactggaccgccaggttttgttgggccaaagggttccagaggaactattggt catgtgggagctcccggtcgaatgggtcaacagggggagcctggtattgcaggttatgag ggccatcagggacctcaaggccccatagggcctccgggaccaaaaggtgaaaagggcgaa caaggggatgatgggaaggtagagggtcctcctggtcctccgggtgacatgggacctcca ggtgacagaggagaaagaggggagccaggagatcctgggtacaaagggcaaattggtgtg gatggtgagcgaggtagacccggtgctcccggactgccaggacatcctggacctcaaggg cagcaaggacccaaaggggccaaaggagatcaaggtcagaaaggcaaacagggtcaggca ggaccaaaaggagccagaggaccagaaggtgtaggtggtccttctggtcctagaggtgtg gtgggccgagagggtcaggagggtgtacctggggttgatggagtcccaggaaaagatggc agtaaaggaatcccgggagagcatggtgacgatggggaggctggtcttcctggaaaagct ggctcgagtggtaaaactggtgttccaggactcccaggagatcagggagcttttggacca aagggtgagcggggtcttccgggtcagagtggacctcctggaaaaagaggcttcaaaggt ggaatgggattgccaggaccacagggtgacaaaggacctaaaggacaacctggtgacaca ggagagccgggttttccaggagttctgggagtttttggaccaagggggcctccaggagac tttgggccaaagggcataagagggccaaaagggcctcaaggatcagtgggtagacgagga attgttggtcctgtaggaattattggtcccaatggaagagcaggccctcgaggacagaaa ggcaatcgtggcgagactggagctcaaggtccaaggggatctcctggacctcctggacgt ccaggtcctccaggtgtccctctgtcatttaaagaagatggtgtattgtttatggattta tccaccccactcaggactgagaataagcctgtgatggacctgccgatgttggaccaaggt gcagagatcttcaagaccctccactacctcagtaacctgatccagagcctgaagaaccca ctgggcactcggaccaaccctgcccgtatctgcagggacctgcacagctgtgaacagaag ttaaatgatggcacgtactggattgaccccaacctgggttgcatgtcagacacaatagaa gtcacctgcaactttaccggaggtggacagacttgcctgaaaccagtaacagtgtccaaa ccaacagtcagtgttggtcgtgttcagatgaacttcctccacctgctgagctcagaggcc gtgcagcacgtcatcatccactgcctggatgtctctatttggaggtcagcagaggatcag cctgttgaacaggggtctgtgaaattcaaggcctggagtggggaggtgtttgaggtggga ggagagctggagccagaagtcttggaggattcctgctggataaaagatgggcgctggcac cagacccattttgtgttccactccctagaccccaccctcctccctgtggttgacatttac aacctgccaaaagctagtcccggctctcattaccacctagaagtgagccctgtttgcttc ctgtga

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