Oreochromis niloticus (Nile tilapia): 100694562
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Entry
100694562 CDS
T06104
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X2
KO
K06237
collagen type IV alpha
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl04382
Cornified envelope formation
onl04510
Focal adhesion
onl04512
ECM-receptor interaction
onl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100694562 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100694562 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100694562 (col4a6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
100694562 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
onl04147
]
100694562 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
onl00536
]
100694562 (col4a6)
Exosome [BR:
onl04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
100694562 (col4a6)
Glycosaminoglycan binding proteins [BR:
onl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100694562 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
100694562
NCBI-ProteinID:
XP_005464117
LinkDB
All DBs
Position
LG3:33215777..33365180
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AA seq
1682 aa
AA seq
DB search
MKVLFCVIALTFAAKSALGGGKFDEPCDGLDCSRGCKCFPEKGSRGRPGPLGEVGASGQD
GPRGVLGPSGPKGEKGHLGLKGPSGPKGDKGPMGVPGFQGSDGVPGHPGQPGSRGPPGLD
GCNGTRGDPGDPGFGTGIPGARGFPGPTGPKGQKGEPVFVSDNDGTRGPPGPPGPPGPPG
LQGPYGPVGFPGPEGPEGYPGLPGPPGPPGPMGSRSDGYQGEKGDKGDVGLPGPRGSPGD
TSLSGPKTLTIYKGDKGDPGPKGIKGYPGIPGLPGPYGYPGEYGEKGIPGYPGSRGAPGL
NGPPGVPGLQGPKGRPGIPGSPGYPGFKGDQGDPGPPGPTSVVNGGYAIRGPPGDSGLRG
FPGPRGDQGFPGFQGPPGQPGPDRFGPGLQGPPGPKGVKGEVGDPGLPPTGFEGFPGPPG
PPGPSGLPGPQGPPGDSEGLPTAPPGVPGLPGPTGLRGNIGAKGFRGDPGDCRCSGGDFS
GLVGPPGLPGTNGNPGFPGVKGFLGDPGSLGFSGLPGPSGPPGQRGFPGRKGEKGAPYYP
TLNLAPKGVIGDPGPRGPTGETGNPGRDGLPGFPGFPGPPGDAGIGSRGEKGFQGFPGSK
GRPGGPGEPGIGFDGAPGLRGDPGEPGIPGLPGPPGSPGVKGETLPCVFTGEAGDPGDSG
FSGQPGLKGKPGLQGTTGRPGFDGPKGERGDPGTGGVRGPEGFTGPRGDPGIPGIPGQSF
DGPRGKDGLPGRPGAKGQPGEVLGATPGFPGQNGLPGIPGDKGQPGTPGGLGIPGFDGRP
GALGRKGERGVNGIPGSPGLPGLPGDPVGGIPGPPGPEGSKGLRGPPGCPGFPGRKGERG
DPGFPGPAGMKGTPGRPGTPGLPGTRGRPGLPGPGTIAGIPGAPGRKGDRGFQGMIGFPG
FPGRPGSSGFPGVKGQPGVPGANGRLGSPGFFGTKGDRGLPGPPGLPGRPLSSQLVEKGD
IGDPGRPGFSGFTGPRGDKGQPGAPGRPGRPGVPGFPDLSKGLPGEPGFSGEPGLPGFSG
QKGESGIIGFPGTVGPKGNDGFPGLPGRPGEVGRPGAKGLPGETFGYPGAPGLKGRQGDS
GIPGDQGKVGEPGDNGFPGNPGFLGQKGIPGEQGRYGIMGSPGFPGPKGQPGLPGIGRGL
DGVPGLPGFPGNRGFKGFPGPPGLDGLNGLAGPKGLPGNPGAILGGSPGPSGSPGLKGER
GVSQPGVPGYPGQKGQRGEPGPSGLKGSPGIPGPPGPMSIEIFPGPTGDAGLPGLDGQYG
FQGPPGLPGPPGPGTAQGDRGDPGLPGFPGTPGTKGEPGLPGVPGFLGRPGLKGQKGDGG
FAGIPGVNGFRGDSGFPGSKGTAGIRGFPGPKGLPGIIFPASLPNGPYPQGDPGVPGERG
SPGNPGEPGQSGFPGRKGTVGNPGPSGRLGRTGGPGLQGPLGDPGPPGFPGSPGAQGLPG
TIGPPGIPGSIGRSHSIGYTLVKHSQSPQVPMCPQGMAKLWEGYSLLYVEGQEKAHNQDL
GQPGSCLPRFNTIPFLYCSPSEICYYASRNDKSYWLSTTAPIPMMPVEKEEIRPYISRCS
VCEAPSQAVAVHSQDLTIPSCPPGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFR
ATPFIECNGARGTCHYFANKYSFWLTTVDPNNEFTFSPDKETLKGGQERFRVSRCQVCSK
IL
NT seq
5049 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtcctgttttgtgtgatcgcgttgaccttcgcggcgaagtctgcactcggaggt
ggcaagtttgatgagccatgtgacggcttggactgcagcagagggtgcaagtgctttcca
gagaaaggaagcaggggtcgtccaggacctctcggtgaagttggagcgtctggacaggat
gggccacgtggggtccttgggccttctgggccaaaaggagagaagggccaccttggactg
aaaggaccgtcgggcccaaagggagacaaaggaccaatgggggtgcctggattccaagga
agtgatggcgtgcctggtcaccctggtcagccgggcagcagaggaccaccgggactggac
ggctgtaatgggaccagaggagatcctggagatcccggctttgggactggaatccctggc
gcccgtggatttcctgggccgactgggcccaagggtcagaaaggagagcccgtattcgtc
tcggataacgatggtacacggggtcccccaggtcccccaggaccccctggcccacctggt
ttacaaggtccttatggtccagttggttttcctggtcctgaaggacctgaaggataccca
ggcctaccaggtcctcccggtcccccagggccaatggggagccgtagtgacggatatcaa
ggagagaaaggagacaagggtgacgtgggtcttcccggacccaggggtagtcccggcgac
acgtcgctaagcggcccaaaaacactcactatctacaaaggagataagggggaccccggt
ccaaagggaattaaaggataccctggaatacctggcctacctggaccctatggctatcct
ggagaatatggagaaaagggcattcctggataccccgggagcagaggcgctccaggactt
aacggacctcccggtgttccaggactgcagggacccaaaggacgtccaggcatcccaggc
tcaccgggatacccaggattcaagggagaccagggagaccccggacccccaggacctacg
tctgttgttaatgggggttatgctattcgaggacctccaggggactcgggtttacgtggc
tttccaggaccccggggtgaccagggatttccaggctttcaaggacctcccggccaacca
ggacctgatcgttttggtccaggtcttcaaggtcctcctgggcccaaaggtgtaaaagga
gaagtgggtgaccccggcttaccacccactggttttgaaggtttcccaggaccccctggg
cccccaggacccagtggccttcctggacctcaaggccctccaggggactctgaaggtcta
ccaactgctccccctggagtccccgggctgcctggtcccacaggattgcgaggaaacatt
ggtgccaaagggtttagaggtgaccctggtgactgcagatgttctggaggagacttctcg
gggttagttggaccacctggacttccaggaaccaatggcaatcctgggttccctggggtg
aagggttttcttggagaccccggttcactcggcttcagtggtcttccaggacctagtggt
cctcctggtcagcggggcttccccgggcgtaaaggagagaagggggctccatattacccc
accctaaatctggctccgaagggagtcataggagatcctggacccagaggacctacaggt
gaaacaggaaatcctggaagagatggactgcctggcttccctggatttcccggaccccca
ggtgatgcaggcatcggctcaaggggagaaaaaggattccaagggtttccaggttctaag
ggacgtcctggaggccctggtgagccgggcattggctttgatggagcacccggcttgcgt
ggagaccctggagaacccggtatacctggtttgccagggccacctggttcacctggagtg
aaaggagaaactctgccttgcgtatttacgggtgaggcaggagacccaggcgattccggt
ttctctggacaaccaggtcttaaaggtaaaccagggctccaagggaccactggacgtcca
gggtttgatggccccaaaggagaaagaggagaccctggcaccggaggcgtgcgtggacct
gaaggtttcactggacccagaggggaccctggtattccaggtatcccagggcagagtttt
gacgggcccaggggtaaggacggtctcccaggccgtcctggagccaagggccagcctgga
gaggtgcttggagctacacctggatttcctggacagaacggtttaccaggaattcctgga
gacaagggccagccgggaacacctggaggactcggaatccctggatttgatggacgtcct
ggtgctcttggtcgaaaaggagaacgcggagttaacggtattcctggtagtcctggcctt
cctgggcttccaggtgacccagttggtggcattcctggtccacctggccctgaaggtagc
aagggtctgagaggaccaccaggctgcccaggtttccctggtcggaaaggagagagagga
gacccaggtttcccagggcctgctgggatgaaaggaactcccggaagacctggtactcct
gggttaccaggaacaaggggacgccccggtttaccaggaccaggaactatagctggaatt
ccaggagcaccaggaagaaagggtgacagaggcttccaaggaatgataggcttccctggg
ttcccaggacgtcctggcagctcaggatttcccggagtgaaaggacagcctggagtgcct
ggagcaaacggacgccttgggtcgcctggattctttggaactaaaggtgacagaggatta
cctggtccacccggacttcctggtagacctctttcatctcagcttgtagagaaaggagac
atcggagaccctggaagacccggattttctggctttactggacccagaggtgacaagggt
cagccgggtgcacctggtcgtccgggacgacctggagttcctggtttccctgatctgagt
aaagggctgccgggagaacctggcttttctggggaaccaggacttccaggcttctctgga
caaaaaggagaatctggaattatcggattccccggcactgtgggaccaaaaggcaatgat
ggctttccaggtttacctggaagacctggagaagttggtcggcctggtgccaaaggacta
cctggagaaacttttggttatcctggagcaccaggacttaaaggccggcaaggagattca
gggatcccaggcgaccaagggaaagttggtgaacctggcgataatgggtttccaggaaat
ccaggtttcctcggacagaaggggattcctggtgaacagggacgttatggaataatgggc
tctcctggtttccctggaccaaagggtcagcctggattgccaggaataggaaggggactg
gatggggttccgggtttgcctggattccctggaaatcgtgggtttaaaggttttcctgga
cctcctggtttggatggacttaatggcttagcaggacctaaaggcctgcctggaaaccca
ggtgcaattctgggaggtagccctggcccttctggtagtccagggttgaagggagaaaga
ggtgtttcccaacccggtgttccagggtatcccggccaaaaaggacaaagaggagaacca
ggtccttctggattaaaagggagccctggtattcctggacctcctggacccatgtcaata
gaaatctttcctggacctacaggagatgcaggtctccctggactggatggacagtatggt
ttccaaggtcctccaggtcttcccggcccacctggtccaggcacagctcagggagacaga
ggtgaccctggtctgccaggcttcccagggacccctggtacaaagggcgaaccaggatta
cctggagtccctggattccttggcagacctggtttaaaaggacaaaagggtgatggtggt
tttgctggaattcctggtgtcaatggttttagaggtgactctggttttcctggaagcaaa
ggaacggcaggaattagagggtttccaggtccgaaaggtttgcctggaatcatatttcca
gcttcactgccgaatgggccatatccacaaggtgatccgggtgtacctggtgaaagagga
agccctggtaaccctggagagcctggtcagtctggttttcctgggcgtaaaggtactgtg
ggtaaccctggtccatcaggtagactgggcaggactggaggtcctggtttgcaaggacct
cttggggatcccggacctcctggtttccctggatcccctggagcacaagggttacctggt
acaattggccctcccggcattcccggcagcatcggccgcagccacagcatcggctacact
ctggtgaagcacagccagagcccccaggttcccatgtgtcctcaaggcatggccaaactg
tgggagggctacagtctgctgtatgtagagggacaggagaaagcacacaaccaagacctc
ggtcagccggggtcgtgtctccccaggttcaacacgatccccttcctctactgctcgccc
agcgagatttgctactacgctagccgcaacgataaatcctactggctctccacaaccgca
cccatacccatgatgcccgtggaaaaggaggagataagaccttacatcagcaggtgttca
gtatgtgaggctccatctcaggcagtggcagtccacagtcaggatttgacaatccccagc
tgtcctcccggctggaggagtctctggataggatactccttcctaatgcacacagcagct
ggcgctgagggcggcggtcagtccttggtgtctcccggctcctgtctggaggacttccgg
gcgactccgttcatcgagtgcaacggcgctaggggcacctgccactactttgccaataaa
tacagcttctggctgacaaccgtggatcccaataatgagtttaccttctcgccagacaag
gagacgctgaagggaggccaggagcgcttcagagtcagccgctgccaagtgtgcagcaag
atcttgtag
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