Oreochromis niloticus (Nile tilapia): 100694601
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Entry
100694601 CDS
T06104
Symbol
cpsf2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100694601 (cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
onl03019
]
100694601 (cpsf2)
Messenger RNA biogenesis [BR:
onl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
100694601 (cpsf2)
U7-dependent histone pre-mRNA processing factors
100694601 (cpsf2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
100694601
NCBI-ProteinID:
XP_003446332
Ensembl:
ENSONIG00000005901
UniProt:
I3JEY6
LinkDB
All DBs
Position
LG15:complement(14766051..14775227)
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AA seq
787 aa
AA seq
DB search
MTSIIKLTAVSGVQEETALCYLLQVDEFRFLLDCGWDENFSMEIIDVMKRHVHQVDAVLL
SHPDPIHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRNNSEDFTLFTLDDVD
AAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCSLESLSRPSLLITDSFNAAYVQPRRKQRDEQLLTNVMETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGAYPLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLTLCHSLADLARVPSPKVVLCSQPDLESGFSRELFIQWCQNAKNSIILTYRTT
PGTLARYLIDNPGEKMLDLEVKKRVKLEGKELEEYLEKEKLKKETAKKLEQAKEVDVDSS
DESDMDDDLDQSAVVKTKHHDLMMKGEGSRKGSFFKQAKKSYPMFPTHEERIKWDEYGEI
IRLEEFLVPELQATEEEKSKLESGLTNGDEPMDQDLSVVPTKCISSTESLEIRARVTYID
YEGRSDGDSIKKIINQMKPRQLVIVRGPPEASLDLAESCKAFSKDIKVYTPKLQETVDAT
SETHIYQVRLKDSLVSSLQFCKAKDTELAWIDGVLDMRVVKVDTGVILEEGVKDEAEESE
LAMDIAPDLGTDPVNIAVAAQRAMKNLFGEDEKEFSEESDVIPTLEPLPPNETPGHQSVF
INEPRLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRRTEAGRIGLEGCLCDDYYKIRELL
YQQYAVV
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccattatcaagctaacagccgtgtcaggggttcaggaggagactgccctttgt
tacctgctgcaggtggatgaattccgcttcctcttggactgcggctgggatgagaacttc
tccatggaaatcatagatgttatgaagagacatgttcatcaggtcgacgctgtgctgctc
tcccatcccgaccccatacacttgggagccctgccatacgctgtgggcaaactggggctg
aactgtactatctatgccacgattcctgtctacaagatggggcagatgttcatgtacgat
ctgtatcagtcccgaaacaacagtgaagattttacactgttcactcttgatgatgtggat
gctgcttttgataagatccagcagctgaagtactctcagattgtcaatttgaaaggaaaa
gggcacggtctttccattactcctcttccagccggtcacatgattggaggcactatttgg
aaaattgtgaaggatggggaggaggagattgtttacgccgtggactttaaccacaagaga
gaaatccacctcaatggctgctcattggagagcctcagccgtccatccttacttattaca
gactccttcaatgcggcgtatgtacaaccacgtcgcaagcaaagagatgagcagctactt
accaatgtgatggagaccctgcgtggtgatggcaatgtccttattgccgtcgatacagct
gggcgtgtgctggaactggctcagctcctggaccagatttggaggacgaaggatgctggg
ctcggagcttacccactcgctctgcttaacaatgttagctacaatgtagtggagttctca
aagtcccaggtggagtggatgagtgacaagctcatgaggtgttttgaggacaagaggaac
aacccgttccaattccgacatttgaccctgtgccacagtctggcagacctggcccgtgta
cccagccccaaggtggtgctctgcagccaaccggaccttgagtcagggttttctcgagaa
ctttttatccagtggtgtcaaaatgcaaaaaattccatcatcctgacgtaccgcaccaca
cctggaaccttagctcgctacctcatcgacaaccctggagaaaagatgctggatctggag
gtcaagaagagagtaaaactcgaaggcaaggagctggaagaatacctggaaaaggagaaa
cttaagaaagaaactgctaaaaaacttgaacaagcaaaagaggtggatgtggactccagc
gatgagagcgatatggatgatgatctggatcagtcggctgtagtaaaaaccaaacaccac
gatttgatgatgaagggcgagggcagccgtaaaggcagtttcttcaaacaggccaaaaag
tcatatccaatgttccccacacacgaggagagaatcaaatgggacgagtatggagaaatc
atcaggctagaggagtttctggttcctgaattgcaagccacagaggaggagaagagcaaa
ttagaatctggtttgaccaatggagatgaacctatggaccaggatctgtctgtagtcccc
acaaaatgcatctcaagcacagaaagtcttgaaataagagcaagggtcacgtacatagac
tacgagggtcgctctgacggggactccataaagaagattatcaatcagatgaagcccaga
cagctggtgattgttcgtgggccaccagaagccagtctggacctggcagagtcctgcaag
gcttttagcaaggacatcaaagtttacacgcctaaactgcaggaaactgtggatgccact
agtgaaacccacatctaccaggtgcggttaaaagactccttggtgagttctctgcagttc
tgcaaggccaaagacacggagctagcgtggattgacggtgtgctggacatgcgtgtagtg
aaggtggataccggtgtgatactggaggagggtgtgaaagacgaggcggaagaaagcgag
ctggctatggacatcgcccccgatcttggcactgaccccgtcaacatagcagtcgcggca
cagcgagccatgaagaacttgttcggagaggatgagaaggagttttccgaagagagtgat
gtcattcccacgctggaaccactgccaccaaacgagactccagggcatcagtcggtgttc
atcaacgagcctcgtctgtctgacttcaagcaagtcttgctgagagagggcatccaggct
gagtttgtgggaggagtgctggtatgcaacaacatggtggccgtccgcagaacggaggcc
ggacgcattggcctggaaggctgcctgtgtgacgactattataagatccgggagctgctg
tatcagcagtacgctgttgtatag
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