Oreochromis niloticus (Nile tilapia): 100694829
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Entry
100694829 CDS
T06104
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl04382
Cornified envelope formation
onl04510
Focal adhesion
onl04512
ECM-receptor interaction
onl04518
Integrin signaling
onl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100694829 (col4a5)
04518 Integrin signaling
100694829 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100694829 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100694829 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
100694829 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
onl04147
]
100694829 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
onl00536
]
100694829 (col4a5)
Exosome [BR:
onl04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
100694829 (col4a5)
Glycosaminoglycan binding proteins [BR:
onl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100694829 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
100694829
NCBI-ProteinID:
XP_005464118
LinkDB
All DBs
Position
LG3:complement(33143167..33214249)
Genome browser
AA seq
1686 aa
AA seq
DB search
MSKDSKCLRQLGAVLFLVLCAEVQRSDSAACHGCAGSKCDCSGVKGEKGERGFPGLTGQP
GVPGFPGPEGPIGPRGEKGSDGPQGPGGPKGIRGPPGTPGFPGTPGLPGLPGQDGPPGPR
GVPGCNGTKGDRGFPGSPGIPGQQGFPGPPGLPGQKGDPGDVISTNRFGEKGAVGLPGLP
GGPGRPGPPGTQGPVGPPGPRGFEGRPGPPGPPGPKGNMGLNFQGPKGEKGAPGLQGPPG
PPGQVGEQTKPAETEIQRGDKGDQGPPGPKGDPGLPGPPGPYGGQKGEKGEPGEPGKRGK
PGKDGDPGSPGYPGPTGETGQPGVPGRDGETGQKGDRGFPGPPGEVIGGPIGNQVGPKGE
PGLPGTPGLKGDRGVQGFTGPPGEPGLPGTGSGGFPGPQGFPGERGQKGETGPPGIFLPG
PPGRAGSPGPPGPPGPRGFPGTSSGQTCIPGLPGVPGAQGERGFPGEIGQKGEKGETCVN
CVGSVSPIPGPQGPPGPPGFPGPQGAQGFKGDRGFPGTPGSIGPSGPPGPQGPPGLNGEK
GDPGDPIRVNGLRGEKGDTGFPGPPGLPGLEGTPGRDGAPGPPGPKGAPGSLLVKGERGL
PGEPGFPGNPGDRGPPGLPGFGNPGPRGEKGIQGVSGRPGSAGAPGTKGEPGQTTTEKGA
KGERGRDGEPGQPGSPGVPGQPGQPGFPGLPGAKGEPGIPGIGLPGPPGPKGFPGVAGQP
GAPGGPGRPGIDGRPGDPGFPGPKGEPGVGRPGPPGLVGAPGPKGSTGPKGDPGFPGSPG
LSGRPGADGVPGFKGEPGTPGTPGPRGPPGTPSYGGTGPPGLPGPQGPMGPPGLPGSDGP
KGDPGPPGLDIPGPPGDPGAPGFQGPPGPIGTPGPPGGPGRDGLPGLPGQKGDMGPIGPP
GPSGGPGTPGGPGAPGFKGDPGFPGRDGAPGTPGTKGERGDMGLQGPPGPSDPSQLLKGQ
KGDPGPSGGTGFPGPKGATGLPGDPGLPGTDGSPGRPGPPGPKGDPGRQGGPGIPGSPGP
KGQMGDMGIPGPPGQKGVPGVSGIPGSPGQPGSPGYQGPKGEPGSAGVGPPGLTGQKGDP
GLPGYPGNPGLKGNPGLPGPQGVTGRPGDKGDPGLPGFQGPPGIPGPKGVDGVPGTPGSS
GAPGRPGGPGPQGPSGLPGEKGQAGRDGIPGPAGVKGEPGIPGYGGPGPAGSPGLPGIKG
DTGPPGVPGSPGFPGPKGDPGSPGGPGENGAPGFPGPAGLSLPGPKGATGPPGLPGRAGP
AGPPGPPGPQGPRGPAGIGGVKGEKGTLGIPGIPGNPGQKGDPGFPGNPGTPGPTGPAGI
KGDSGQPGVPGFPGLKGDIGYPGPSGPPGDRGLPGERGTPGDPGEGSPPVVLKGERGPPG
LQGLRGSPGPPGLPGQPGGPGIKGDPGGPGNDGPPGFNGPPGRKGDIGPGGQPGQPGNPG
PRGSDGPQGPPGVPGSVSAAHGFLITRHSQTTDDPECPTGTKFIYNGYSLLYVQGNERAH
GQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTDRPMPENMAPFVGERIRP
YVSRCRVCEAPAMVIAIHSQTIQIPSCPENWEVLWIGYSFMMHTSAGAEGSGQALASPGS
CLEEFRSSPFIECHGRGTCNFYANSYSFWLATVEPSEMFSKPQSETYKAGSLRTRVSRCA
VCMKRT
NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaagactcaaagtgcctgcgacagctcggtgcggtgttatttctcgtcctgtgc
gccgaggtgcagcgatccgactctgcggcttgccatggatgtgcaggatccaaatgtgac
tgcagtggagtaaaaggagagaagggtgaaaggggtttcccaggtttgacgggacagcca
ggcgtcccaggattccctggaccagaaggaccaattgggcccagaggagagaagggaagt
gatggacctcaaggaccaggcggtccaaaaggaataagagggcctccaggaacaccagga
tttccaggaacaccaggacttccagggctacctggacaggatggtcctccaggtccgaga
ggagtgccgggttgcaatgggacaaagggtgacaggggtttcccaggaagtccaggaatc
cctgggcagcaaggatttccaggtccacctggtctgccaggacaaaagggagacccaggt
gatgttatctccaccaatcgtttcggagagaaaggagcagtgggtttacccggtttgcca
ggaggtcctggccgacctggacctccaggtacacaaggtccggtaggtcccccaggaccc
agaggctttgagggtcgtccaggtcctcctggtccacccgggcctaaggggaatatgggt
ttgaatttccaaggacccaaaggagaaaagggtgcaccaggtttgcaaggacctcctggt
cctccaggacaggttggggagcagacgaagccggctgagactgaaattcagagaggagac
aagggcgaccaaggacctcctggccctaaaggtgatccgggtttaccgggacctcctggt
ccctatggtgggcagaaaggagaaaagggagaaccaggagagccgggcaaacgaggaaaa
ccaggcaaagatggtgatcctggttctccaggatacccagggcccactggagagacaggc
cagcctggtgttccagggagggatggtgagacaggacaaaaaggtgatcgtggattcccg
ggtccaccaggggaggtgattggcgggccaatagggaatcaggtggggcctaaaggtgag
cctggcttacctggaacacctggactcaaaggagacagaggagtacaaggtttcacagga
cctccaggagaaccaggactcccaggaaccggtagtgggggttttcctggacctcaaggt
ttcccaggagagagaggtcagaagggagagacaggccctccaggaatctttctgccaggc
cccccaggtcgtgcagggtctcctggaccccctggtccgccagggccccgtggatttcca
ggcacttcctcaggtcaaacctgcataccaggacttcctggggttcctggtgcacaagga
gaaagaggtttccctggagagataggacagaaaggtgagaaaggtgaaacctgtgtgaac
tgcgtaggaagcgtcagtcccatccctggacctcaaggacctccaggaccgcctggattt
cctggacctcaaggcgcccaaggtttcaagggagacagaggttttccaggaacacctggc
tctattggccccagcggtcctcctggtcctcaaggtcctcccggcctcaatggagagaag
ggagatccaggtgatcccatcagagttaatggtttgaggggagagaagggtgacactggc
ttccctggaccacctggtctgcccggtctggaagggacgcctggtcgtgacggagcccct
gggcctcctgggcctaaaggagctcctggctcgttgttggtgaaaggagaacgaggcctc
cccggtgagccaggtttccccggtaatccaggagacaggggtccccctggtcttcctggg
tttggaaatccaggacctcgtggagagaaaggtatccagggtgtctcaggaagaccggga
tctgctggtgcaccaggaactaagggtgaacctggtcagacaacgacagagaaaggggcc
aaaggagaaagaggtcgggatggcgagcctgggcagcctggttcaccaggtgtaccaggt
cagcctggacagcctggttttcctggtttaccgggagcgaagggtgaacccggaatccca
ggcattggactgccaggacctccaggaccaaaaggattcccaggtgttgccgggcagcca
ggagcccctggaggaccaggaagaccaggaatagatggacgtcccggtgacccgggattt
cctggaccaaagggtgaacctggtgttggacgtcctggtcctcctggtttagtaggagca
ccaggacctaaaggttccactggacctaagggagatcccggtttccctggtagccctggt
ttgtcaggacggcctggagctgatggagttccaggattcaaaggtgagcctggtacacct
ggtacacctggacctcgtggcccccctggaaccccctcttatggcggaacaggcccaccg
ggtctcccaggacctcaaggcccgatgggaccaccagggctgccaggatcagatggccca
aaaggagaccctggccctccaggtctagacatcccaggcccaccaggagacccaggagct
ccaggttttcaaggtcctccaggtccaattggaacgccaggaccacctggaggacctggc
cgcgatggtttgcctggcttgccaggtcagaaaggagacatgggtcccattggacctcca
ggaccttctggaggaccgggaaccccaggaggacccggtgctcctggatttaaaggtgat
ccaggatttccaggtagagacggtgcaccaggtactcctggtactaaaggagagagggga
gacatgggcctccagggaccgccaggacccagtgatccatcgcagctcttaaagggacaa
aaaggagatcctggaccttcaggtggaacaggttttccaggtccaaaaggtgctactggt
ctccctggtgaccctgggcttccaggaacagacggcagtcctggccgccctggacctcca
ggtcctaaaggagatcctggtcgccaaggaggtccaggtattcctgggtctccaggacct
aaaggccaaatgggagacatgggaatcccaggaccaccagggcagaaaggtgtaccaggc
gtgtcgggtataccaggatccccaggacagccaggatcacctggttaccaaggacccaaa
ggtgagccaggttctgctggcgtcggaccgcctggactaaccggacaaaagggtgatcca
ggcctgccagggtacccaggaaatccaggactaaaaggaaacccaggattaccaggtccc
caaggtgtgacaggaagaccaggtgacaaaggtgaccccggactcccaggattccaaggt
cctcctggtatccccggtcctaagggtgttgacggtgtgcccggtaccccaggtagctca
ggagctccaggtagaccaggagggcctggtccacaaggaccgtctggtctaccaggagag
aaaggtcaggcaggtcgcgatgggattccaggaccagctggagtcaaaggagaaccagga
attccaggttacggtggtccgggtcctgctggaagtccaggactgccaggtatcaaggga
gacacaggtcctcctggtgtacccggcagccctggttttcctggccctaaaggagaccca
ggctcacctggtggccctggtgaaaacggtgcccctggctttcctgggcctgctgggctg
tctctgccaggccctaaaggtgccacaggaccccctggattacctggaagagcaggccct
gcaggtcctccaggtccacccggcccacaaggtcctcgtggacccgcaggaattggtggc
gttaagggagaaaagggtactcttggcatacctggaattcctggcaaccccggacagaag
ggagatcctggttttccgggaaatccgggcacacccggtcctactggacccgctggtata
aagggagattccggacagcctggtgttcctggattccctggattgaagggtgatattgga
tatcctggccccagtggccctcctggagatcgtggattacctggagaacggggcactccg
ggtgatcccggtgaaggttcgcctcctgttgtgctaaagggagaacggggacccccaggt
cttcagggcctacgtggttctccaggaccacctggtttgcctggtcaacctggaggccca
ggtatcaaaggtgaccctggtggtcctgggaacgatggtcctcctggcttcaacggacct
cccggcaggaagggagacattggtccgggaggtcagcctggtcagcctggcaaccctggt
ccccgtggttcagatggtccacaaggtcctcccggtgtcccaggatcagtttctgctgct
cacggtttcctcatcacccggcacagccagaccaccgatgacccagagtgccccactgga
actaagtttatctataatggatactctctgttgtacgtgcaaggcaacgagcgggcacac
ggacaggaccttggcacagctggtagctgcctgcgcagatttagcaccatgcccttcatg
ttctgcaatatcaacaacgtctgcaacttcgcatcccgtaacgactactcctactggctg
tccacggacagacccatgcccgaaaacatggcccccttcgtgggagagcgtatcaggcct
tatgtcagcagatgtagagtctgtgaagctcccgccatggtgattgcaattcacagtcag
actattcagattccttcttgccctgaaaactgggaagtactgtggattggatactccttt
atgatgcacaccagtgcgggtgcagagggctccggtcaggctcttgcctcccccggctcc
tgcctggaggagttccgcagctcccctttcattgagtgccacggcagagggacatgtaac
ttctatgctaactcctacagcttctggctagccaccgtggaaccttctgagatgttcagc
aagccccagtctgagacctacaaggcaggtagcctacggacacgtgtgagccgctgtgca
gtctgcatgaagcgcacgtaa
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integrated database retrieval system
