Oreochromis niloticus (Nile tilapia): 100694829
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Entry
100694829 CDS
T06104
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl04510
Focal adhesion
onl04512
ECM-receptor interaction
onl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100694829 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100694829 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100694829 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
onl04147
]
100694829 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
onl00536
]
100694829 (col4a5)
Exosome [BR:
onl04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
100694829 (col4a5)
Glycosaminoglycan binding proteins [BR:
onl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100694829 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
100694829
NCBI-ProteinID:
XP_005464118
LinkDB
All DBs
Position
LG3:complement(33143167..33214249)
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AA seq
1686 aa
AA seq
DB search
MSKDSKCLRQLGAVLFLVLCAEVQRSDSAACHGCAGSKCDCSGVKGEKGERGFPGLTGQP
GVPGFPGPEGPIGPRGEKGSDGPQGPGGPKGIRGPPGTPGFPGTPGLPGLPGQDGPPGPR
GVPGCNGTKGDRGFPGSPGIPGQQGFPGPPGLPGQKGDPGDVISTNRFGEKGAVGLPGLP
GGPGRPGPPGTQGPVGPPGPRGFEGRPGPPGPPGPKGNMGLNFQGPKGEKGAPGLQGPPG
PPGQVGEQTKPAETEIQRGDKGDQGPPGPKGDPGLPGPPGPYGGQKGEKGEPGEPGKRGK
PGKDGDPGSPGYPGPTGETGQPGVPGRDGETGQKGDRGFPGPPGEVIGGPIGNQVGPKGE
PGLPGTPGLKGDRGVQGFTGPPGEPGLPGTGSGGFPGPQGFPGERGQKGETGPPGIFLPG
PPGRAGSPGPPGPPGPRGFPGTSSGQTCIPGLPGVPGAQGERGFPGEIGQKGEKGETCVN
CVGSVSPIPGPQGPPGPPGFPGPQGAQGFKGDRGFPGTPGSIGPSGPPGPQGPPGLNGEK
GDPGDPIRVNGLRGEKGDTGFPGPPGLPGLEGTPGRDGAPGPPGPKGAPGSLLVKGERGL
PGEPGFPGNPGDRGPPGLPGFGNPGPRGEKGIQGVSGRPGSAGAPGTKGEPGQTTTEKGA
KGERGRDGEPGQPGSPGVPGQPGQPGFPGLPGAKGEPGIPGIGLPGPPGPKGFPGVAGQP
GAPGGPGRPGIDGRPGDPGFPGPKGEPGVGRPGPPGLVGAPGPKGSTGPKGDPGFPGSPG
LSGRPGADGVPGFKGEPGTPGTPGPRGPPGTPSYGGTGPPGLPGPQGPMGPPGLPGSDGP
KGDPGPPGLDIPGPPGDPGAPGFQGPPGPIGTPGPPGGPGRDGLPGLPGQKGDMGPIGPP
GPSGGPGTPGGPGAPGFKGDPGFPGRDGAPGTPGTKGERGDMGLQGPPGPSDPSQLLKGQ
KGDPGPSGGTGFPGPKGATGLPGDPGLPGTDGSPGRPGPPGPKGDPGRQGGPGIPGSPGP
KGQMGDMGIPGPPGQKGVPGVSGIPGSPGQPGSPGYQGPKGEPGSAGVGPPGLTGQKGDP
GLPGYPGNPGLKGNPGLPGPQGVTGRPGDKGDPGLPGFQGPPGIPGPKGVDGVPGTPGSS
GAPGRPGGPGPQGPSGLPGEKGQAGRDGIPGPAGVKGEPGIPGYGGPGPAGSPGLPGIKG
DTGPPGVPGSPGFPGPKGDPGSPGGPGENGAPGFPGPAGLSLPGPKGATGPPGLPGRAGP
AGPPGPPGPQGPRGPAGIGGVKGEKGTLGIPGIPGNPGQKGDPGFPGNPGTPGPTGPAGI
KGDSGQPGVPGFPGLKGDIGYPGPSGPPGDRGLPGERGTPGDPGEGSPPVVLKGERGPPG
LQGLRGSPGPPGLPGQPGGPGIKGDPGGPGNDGPPGFNGPPGRKGDIGPGGQPGQPGNPG
PRGSDGPQGPPGVPGSVSAAHGFLITRHSQTTDDPECPTGTKFIYNGYSLLYVQGNERAH
GQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTDRPMPENMAPFVGERIRP
YVSRCRVCEAPAMVIAIHSQTIQIPSCPENWEVLWIGYSFMMHTSAGAEGSGQALASPGS
CLEEFRSSPFIECHGRGTCNFYANSYSFWLATVEPSEMFSKPQSETYKAGSLRTRVSRCA
VCMKRT
NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaagactcaaagtgcctgcgacagctcggtgcggtgttatttctcgtcctgtgc
gccgaggtgcagcgatccgactctgcggcttgccatggatgtgcaggatccaaatgtgac
tgcagtggagtaaaaggagagaagggtgaaaggggtttcccaggtttgacgggacagcca
ggcgtcccaggattccctggaccagaaggaccaattgggcccagaggagagaagggaagt
gatggacctcaaggaccaggcggtccaaaaggaataagagggcctccaggaacaccagga
tttccaggaacaccaggacttccagggctacctggacaggatggtcctccaggtccgaga
ggagtgccgggttgcaatgggacaaagggtgacaggggtttcccaggaagtccaggaatc
cctgggcagcaaggatttccaggtccacctggtctgccaggacaaaagggagacccaggt
gatgttatctccaccaatcgtttcggagagaaaggagcagtgggtttacccggtttgcca
ggaggtcctggccgacctggacctccaggtacacaaggtccggtaggtcccccaggaccc
agaggctttgagggtcgtccaggtcctcctggtccacccgggcctaaggggaatatgggt
ttgaatttccaaggacccaaaggagaaaagggtgcaccaggtttgcaaggacctcctggt
cctccaggacaggttggggagcagacgaagccggctgagactgaaattcagagaggagac
aagggcgaccaaggacctcctggccctaaaggtgatccgggtttaccgggacctcctggt
ccctatggtgggcagaaaggagaaaagggagaaccaggagagccgggcaaacgaggaaaa
ccaggcaaagatggtgatcctggttctccaggatacccagggcccactggagagacaggc
cagcctggtgttccagggagggatggtgagacaggacaaaaaggtgatcgtggattcccg
ggtccaccaggggaggtgattggcgggccaatagggaatcaggtggggcctaaaggtgag
cctggcttacctggaacacctggactcaaaggagacagaggagtacaaggtttcacagga
cctccaggagaaccaggactcccaggaaccggtagtgggggttttcctggacctcaaggt
ttcccaggagagagaggtcagaagggagagacaggccctccaggaatctttctgccaggc
cccccaggtcgtgcagggtctcctggaccccctggtccgccagggccccgtggatttcca
ggcacttcctcaggtcaaacctgcataccaggacttcctggggttcctggtgcacaagga
gaaagaggtttccctggagagataggacagaaaggtgagaaaggtgaaacctgtgtgaac
tgcgtaggaagcgtcagtcccatccctggacctcaaggacctccaggaccgcctggattt
cctggacctcaaggcgcccaaggtttcaagggagacagaggttttccaggaacacctggc
tctattggccccagcggtcctcctggtcctcaaggtcctcccggcctcaatggagagaag
ggagatccaggtgatcccatcagagttaatggtttgaggggagagaagggtgacactggc
ttccctggaccacctggtctgcccggtctggaagggacgcctggtcgtgacggagcccct
gggcctcctgggcctaaaggagctcctggctcgttgttggtgaaaggagaacgaggcctc
cccggtgagccaggtttccccggtaatccaggagacaggggtccccctggtcttcctggg
tttggaaatccaggacctcgtggagagaaaggtatccagggtgtctcaggaagaccggga
tctgctggtgcaccaggaactaagggtgaacctggtcagacaacgacagagaaaggggcc
aaaggagaaagaggtcgggatggcgagcctgggcagcctggttcaccaggtgtaccaggt
cagcctggacagcctggttttcctggtttaccgggagcgaagggtgaacccggaatccca
ggcattggactgccaggacctccaggaccaaaaggattcccaggtgttgccgggcagcca
ggagcccctggaggaccaggaagaccaggaatagatggacgtcccggtgacccgggattt
cctggaccaaagggtgaacctggtgttggacgtcctggtcctcctggtttagtaggagca
ccaggacctaaaggttccactggacctaagggagatcccggtttccctggtagccctggt
ttgtcaggacggcctggagctgatggagttccaggattcaaaggtgagcctggtacacct
ggtacacctggacctcgtggcccccctggaaccccctcttatggcggaacaggcccaccg
ggtctcccaggacctcaaggcccgatgggaccaccagggctgccaggatcagatggccca
aaaggagaccctggccctccaggtctagacatcccaggcccaccaggagacccaggagct
ccaggttttcaaggtcctccaggtccaattggaacgccaggaccacctggaggacctggc
cgcgatggtttgcctggcttgccaggtcagaaaggagacatgggtcccattggacctcca
ggaccttctggaggaccgggaaccccaggaggacccggtgctcctggatttaaaggtgat
ccaggatttccaggtagagacggtgcaccaggtactcctggtactaaaggagagagggga
gacatgggcctccagggaccgccaggacccagtgatccatcgcagctcttaaagggacaa
aaaggagatcctggaccttcaggtggaacaggttttccaggtccaaaaggtgctactggt
ctccctggtgaccctgggcttccaggaacagacggcagtcctggccgccctggacctcca
ggtcctaaaggagatcctggtcgccaaggaggtccaggtattcctgggtctccaggacct
aaaggccaaatgggagacatgggaatcccaggaccaccagggcagaaaggtgtaccaggc
gtgtcgggtataccaggatccccaggacagccaggatcacctggttaccaaggacccaaa
ggtgagccaggttctgctggcgtcggaccgcctggactaaccggacaaaagggtgatcca
ggcctgccagggtacccaggaaatccaggactaaaaggaaacccaggattaccaggtccc
caaggtgtgacaggaagaccaggtgacaaaggtgaccccggactcccaggattccaaggt
cctcctggtatccccggtcctaagggtgttgacggtgtgcccggtaccccaggtagctca
ggagctccaggtagaccaggagggcctggtccacaaggaccgtctggtctaccaggagag
aaaggtcaggcaggtcgcgatgggattccaggaccagctggagtcaaaggagaaccagga
attccaggttacggtggtccgggtcctgctggaagtccaggactgccaggtatcaaggga
gacacaggtcctcctggtgtacccggcagccctggttttcctggccctaaaggagaccca
ggctcacctggtggccctggtgaaaacggtgcccctggctttcctgggcctgctgggctg
tctctgccaggccctaaaggtgccacaggaccccctggattacctggaagagcaggccct
gcaggtcctccaggtccacccggcccacaaggtcctcgtggacccgcaggaattggtggc
gttaagggagaaaagggtactcttggcatacctggaattcctggcaaccccggacagaag
ggagatcctggttttccgggaaatccgggcacacccggtcctactggacccgctggtata
aagggagattccggacagcctggtgttcctggattccctggattgaagggtgatattgga
tatcctggccccagtggccctcctggagatcgtggattacctggagaacggggcactccg
ggtgatcccggtgaaggttcgcctcctgttgtgctaaagggagaacggggacccccaggt
cttcagggcctacgtggttctccaggaccacctggtttgcctggtcaacctggaggccca
ggtatcaaaggtgaccctggtggtcctgggaacgatggtcctcctggcttcaacggacct
cccggcaggaagggagacattggtccgggaggtcagcctggtcagcctggcaaccctggt
ccccgtggttcagatggtccacaaggtcctcccggtgtcccaggatcagtttctgctgct
cacggtttcctcatcacccggcacagccagaccaccgatgacccagagtgccccactgga
actaagtttatctataatggatactctctgttgtacgtgcaaggcaacgagcgggcacac
ggacaggaccttggcacagctggtagctgcctgcgcagatttagcaccatgcccttcatg
ttctgcaatatcaacaacgtctgcaacttcgcatcccgtaacgactactcctactggctg
tccacggacagacccatgcccgaaaacatggcccccttcgtgggagagcgtatcaggcct
tatgtcagcagatgtagagtctgtgaagctcccgccatggtgattgcaattcacagtcag
actattcagattccttcttgccctgaaaactgggaagtactgtggattggatactccttt
atgatgcacaccagtgcgggtgcagagggctccggtcaggctcttgcctcccccggctcc
tgcctggaggagttccgcagctcccctttcattgagtgccacggcagagggacatgtaac
ttctatgctaactcctacagcttctggctagccaccgtggaaccttctgagatgttcagc
aagccccagtctgagacctacaaggcaggtagcctacggacacgtgtgagccgctgtgca
gtctgcatgaagcgcacgtaa
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integrated database retrieval system
