Oreochromis niloticus (Nile tilapia): 100694927
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Entry
100694927 CDS
T06104
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit isoform X1
KO
K07466
replication factor A1
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03030
DNA replication
onl03420
Nucleotide excision repair
onl03430
Mismatch repair
onl03440
Homologous recombination
onl03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100694927 (rpa1)
03420 Nucleotide excision repair
100694927 (rpa1)
03430 Mismatch repair
100694927 (rpa1)
03440 Homologous recombination
100694927 (rpa1)
03460 Fanconi anemia pathway
100694927 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
onl03000
]
100694927 (rpa1)
03032 DNA replication proteins [BR:
onl03032
]
100694927 (rpa1)
03400 DNA repair and recombination proteins [BR:
onl03400
]
100694927 (rpa1)
Transcription factors [BR:
onl03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
100694927 (rpa1)
DNA replication proteins [BR:
onl03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
100694927 (rpa1)
DNA repair and recombination proteins [BR:
onl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
100694927 (rpa1)
MMR (mismatch excision repair)
100694927 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
100694927 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Pox_vIL-18BP
RADX
A_deaminase
Motif
Other DBs
NCBI-GeneID:
100694927
NCBI-ProteinID:
XP_005474789
Ensembl:
ENSONIG00000013135
UniProt:
I3K5X8
LinkDB
All DBs
Position
LG14:complement(27354266..27383739)
Genome browser
AA seq
602 aa
AA seq
DB search
MTKLSEGTIEALSNGTSVSDAVLQLVNIRKLDGGNGPSRFRVMMSDGRHTLSSFMLSTQL
NHMAEENILAPNCICNLKRHVTNILKDGRRVVIILEIDVIKPAKDVAGRIGDPTPYTEGQ
SKGPQSAPVPEIRPPLQPQNRNEAVNRGLNRDFGKKAPSVMPNTPGGSSKVVPIASLNPY
QSKWTIRARVTNKSAIRTWSNSRGDGKLFSMEIVDESGEIRVTGFNQEVDKFFSLIEAGK
VYYISKGSLKIANKQYTSVKNDYEMTLNGESTIIPCEDSCDVPMVQCDFVSISDLENRDK
DAIVDVIGVCKSVDDITRLTTKSNREVSKRTLSLMDMSGKVVTVTLWGEEAEKFDGSSQP
VIAIKGAKLSDFGGRSLSASFSSTLMINPDIPEAYKLRGWYDKEGHAMDGQSLTEVKGGS
GGGNTNWKSLADVKTEHLGHGDKADYYTCVATIVFLRKENCLYQACPSQDCNKKVVDQQN
GMFRCEKCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQLKDSNE
AAFDEVFQHANFNTFVFRNRVKLETYNDESRIKATVMDVKPVDHKEYSKRLILNIRKLAA
NH
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaactctcggagggaacaatagaggctctttcaaatggcaccagtgtcagcgac
gcagtgcttcagttggtgaatattcgcaagcttgatggaggaaatggtccttctcgcttt
cgggtgatgatgagtgatggaaggcacactctgtcatcattcatgctctccacccagctg
aaccatatggctgaggaaaacatactggctccaaactgcatctgtaatctgaagagacat
gtgaccaatatactgaaggatggacgacgagtagtgatcattttggaaattgatgtcatt
aagcctgcaaaagatgttgccggtagaataggagaccctactccttacactgaggggcaa
agtaaagggccacagtcagctcctgtccctgaaatccgacccccgctgcagccacagaac
agaaatgaagcagtgaacagaggtttaaacagagactttgggaagaaagctccatctgtt
atgccaaatactccagggggaagctccaaagttgtgcccattgcaagcctcaacccctac
cagtccaagtggacgatccgcgctcgtgtgaccaacaagagcgccattcgtacgtggagc
aactctcggggggatggcaagctattctccatggagattgttgatgagagtggagagata
cgagtgactggtttcaaccaagaagtggacaagttcttcagtcttattgaggctggcaag
gtctactacatctccaagggctcccttaagatcgccaacaagcagtacacatcagtaaag
aatgactatgagatgacactcaatggcgagtccaccattatcccctgtgaagacagctgt
gatgttcccatggtgcaatgtgactttgtctctatcagtgacttggagaacagagacaaa
gatgctattgttgatgtaattggagtgtgcaagagtgtggacgacataacccgcctgaca
accaagtccaaccgtgaagtgtctaagagaacactcagtctgatggatatgtctgggaag
gtggtgactgtcacactgtggggagaggaagcagaaaagtttgacggatctagccaacct
gtcattgccattaagggggcaaagctttcagactttggaggccggtcactctctgcatcc
ttcagcagtactcttatgatcaacccagacatccctgaggcatataagctcagaggctgg
tatgacaaggaggggcacgctatggatggacagtctctgacagaggtgaaaggtggcagc
gggggaggaaacaccaactggaagtctctagctgacgttaagactgagcatctgggacac
ggagacaaggctgactactacacctgcgtagctacgattgtgtttctgcgcaaggaaaac
tgtctttatcaggcctgccccagccaagactgcaacaaaaaagtggttgaccagcagaat
ggcatgtttcggtgtgagaagtgtgacaaagaattccccaacttcaagtaccgcctcatc
ctctctgccaacattgcagattatggggacaaccagtgggtgacttgcttccaggagagt
gcagaggctatcctgggccagaatgcagcttacctggggcagctcaaggactcgaatgaa
gctgccttcgatgaggtcttccagcatgccaacttcaacacttttgtcttccgcaacaga
gtgaagctggaaacatataatgatgaatcgaggattaaagccacagtgatggatgtgaag
cctgttgatcataaagagtatagcaagaggttgatcctgaacataaggaaactggcggct
aaccactag
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integrated database retrieval system
