Oreochromis niloticus (Nile tilapia): 100695088
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Entry
100695088 CDS
T06104
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl04382
Cornified envelope formation
onl04510
Focal adhesion
onl04512
ECM-receptor interaction
onl04518
Integrin signaling
onl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100695088
04518 Integrin signaling
100695088
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100695088
09142 Cell motility
04820 Cytoskeleton in muscle cells
100695088
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
100695088
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
onl04147
]
100695088
00536 Glycosaminoglycan binding proteins [BR:
onl00536
]
100695088
Exosome [BR:
onl04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
100695088
Glycosaminoglycan binding proteins [BR:
onl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100695088
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
100695088
NCBI-ProteinID:
XP_005476323
LinkDB
All DBs
Position
LG18:15191600..15216614
Genome browser
AA seq
1654 aa
AA seq
DB search
MGTPTLIIPIILFATMLVMTDGKKCVCNRRSRCRCDGVKGSRGDKGFPGNPGSPGLTGRP
GPDGPTGPMGLKGNTGHDGPAGPKGDPGLEGKEGFAGSHGLPGVPGLQGPSGPPGAPGCN
GTDKGEDGPPGIHGTSGPDGLPGPPGRPGSKGESWIPGSSQPGPRGPPGRDGQPGVPGLP
GYNGKPGEPGPRGSVGCPGRRGPPGPKGQEGISVSPGPQGPKGRQGPSGPPGPKAQIKEL
VSGGLVLKGIKGDKGDTGEKGCKGSTGEPGYGQYSKGAKGDRGLPGPEGKPGKDGDPGPR
GFLGRPGPRGDPGYPGVPGVPGEKGNRGPPGPSGDTEPIKGYMGDPGPQGPPGLPGPRGI
LGFPGPRGPPGLGIDLPGLRGPKGFPGLKGDSGEPGADYIRPPGPDGEPGDQGPPGDQGP
PGIPEDRTNRVTKGRPGIKGVNGSPGPMGYDGVFGMKGQKGDPCYECTGSGFPGPPGPRG
ETGPPGFNQPQGDKGDPGFPGPKGLPGRPGPIGEAGFPGRKGEKGESYSFGVPGPKGEKG
DQGQLGRPGDPGSPGLLGSPGHKGNPGPPGDPYLFSGETGDRGVQGPPGPLGRPGPDGYS
GPVGYGPAGPPGMKGDNGVPGFPGLPGIPGEKGEPGVIYSKGLPGPPGLKGWPGSPGSPG
HPGAPGLLGLPGIPGQKGERGPLSFPGMPGKQGQKGDKGQPGVPGPPGRGSPGQPGQEGP
PGPPGPKGDSNPGPPGFPGLPGEDGDPGPTGDPGNPGLPGYPGLTGSPGFPGEKGVKGSE
GLPGLPGSKESCKGLPGPSGEPGPSGYEGPQGPNGFPGEKGNQGLPGFSIPGPAGEPGFP
GPSRTGSQGHHGQKGIKGQNGLPGQPGPRGDPGPDGLPSGYGPDGLPGIAGPPGQRGDPG
PDGPRGPPGPPGMNGDQGPKGAPGAPPQNCPVNSGDPGPPGNPGLAGPSGDPGRNGSKGW
RGKVGAPGDPGPRGSPGDPGLDGLLTSPGFKGHPGAPGDAGLRGTPGPKGIKGDRGIPGK
PGRDGDQGKTGCKGATGEPKYNGDGPPGPAGQKGEPGLTNTNLMKGQKGQPGIAGTEGLP
GIFGLKGDPGPTGLNGPSGSQGPEGSDGPPGCKGQRGPNGPQGNVGPTGNRGFPGPKGSQ
GLDGFPGPAGQKGETILIEGSPGKRGDPGQPGPPGNPGLPGLSVTGIPGLTGDKGIPGPH
GIPGPRGSPGRDGACLPGYRGDPGEPGYPGRKGYSGPPGPPGTAGPGLKGDRGDPGLPGS
QGNPGEPGDPGPQGPPGAIGRPGVPGLRGDPGLPGFPGPAGKIGEPGYIPGPPGQPGAQG
IPGPPGRKGEATVRTVILEPGAQGPPGPPGTPGPPGRTGPPGPPGLPGQRGIKGMQGFSP
PGLPGFTGHKGDKGRAGLPGPDGRPGTPGHKGPAGLPGRTGPTYADSFLIVRHSQSIHPP
KCPHGTCFIYSGYSFLFINGYKRAHGQDLGTTGSCLPHFSTMPFLFCDTENTCRYASRND
YSYWLSTDTPMPMNMVSISGEMLKSYISRCSVCETTSNVIAIHSQRTLIPECPRGWESLW
TGYSFIMQTGAGAEGSTQPLISPGSCLENFRQVPFIECHGRGTCNYYPDSYSYWLASLDP
NNMFGKPIPQTVKGPFLESIISRCRVCRKPRASR
NT seq
4965 nt
NT seq
+upstream
nt +downstream
nt
atgggaactccaacactcataattcctataatcctgtttgctacaatgctggtgatgact
gatggaaaaaagtgtgtgtgcaacagaagatcaaggtgccgctgtgatggagtgaaaggc
agcaggggagacaaaggatttccaggaaatccaggttcccctgggctaacaggacgtcct
ggaccagatggtcccactgggccgatgggactaaagggaaacactgggcatgatggacca
gcaggaccaaaaggcgatccgggactcgaaggcaaagaggggtttgctgggagtcatggc
ttaccaggtgtcccaggcttacaggggccttcgggccccccgggagccccaggctgcaat
ggaacagacaagggggaagacggacctcccggtatacatgggacctccggtcctgatgga
ctgccaggtccaccgggtcggcctggatctaagggtgaatcttggataccaggcagttca
caaccagggccccgtggaccacctgggagggatggacagccgggagttccaggtttacct
ggatacaatggaaaacctggtgaacctggaccaaggggatctgttggctgtcctggacgt
cgagggcctccaggaccaaagggtcaggaaggcattagtgtttccccaggacctcaagga
cctaaggggagacaaggcccatcaggtccacctggaccaaaagctcagatcaaggagctt
gtctcagggggtctcgtgttaaaggggataaaaggagacaagggagatacaggagaaaag
ggctgcaaaggttcaacgggagaacctggttatggacaatatagtaaaggcgcaaaagga
gacagaggattaccaggtccagagggaaagccgggcaaggatggtgatcctggaccacgt
ggatttctgggaaggcctggccccagaggggatccaggatatccaggagtgccaggagtg
ccgggtgaaaagggaaataggggtccgcctggcccaagtggagatactgagccaatcaaa
ggatacatgggagatccaggtcctcaggggccccctggacttcctgggcctcggggtatt
ctgggctttcctggaccacgaggacctccaggattaggtattgatctgcctggcctacgt
ggtcccaagggctttccaggcctaaaaggtgattctggggagcctggggctgattatatc
agacctccgggtccagatggagagcctggtgaccaaggacctcctggagatcagggccca
cctggaatccctgaagacagaactaacagagttaccaagggtcggccaggaattaaagga
gtgaatggatcgcctggacccatgggatacgatggggtgtttggaatgaaaggacaaaag
ggggatccctgttatgagtgtactggatcaggattcccaggaccaccaggtccccggggt
gaaactggccctcctggcttcaatcagcctcaaggtgataaaggtgatcccggtttccca
ggacctaaaggcttaccaggaagacctggtccaattggtgaagcaggttttccaggtcga
aaaggagagaagggagagtcatattcctttggtgttcctgggccaaagggagaaaaaggg
gaccagggacagcttgggaggcctggggatccgggttcacctgggcttctaggatcgcca
ggtcacaaaggcaatccaggacctccaggggatccgtatctcttctctggtgaaacggga
gaccgtggagtccaaggcccaccaggccctttaggcagaccaggaccagacggctactct
gggccagtgggttatggacctgctgggcctccaggaatgaaaggagataatggggtacct
ggttttccagggctgccaggaattccaggagaaaagggggaacctggagtcatatacagt
aaaggacttcctggcccacctggattgaaaggttggccaggttcacctggaagcccaggt
catccaggggctccaggtcttctaggactaccaggtataccaggccagaaaggagaacgt
ggccctttgtcatttcctggaatgccagggaaacaaggacagaaaggtgacaagggccaa
ccaggtgtcccaggccctccaggtagaggttccccaggtcaaccaggccaagaaggccct
cctggtcctccgggaccaaagggtgatagcaaccctgggcctccaggctttccagggctt
ccaggtgaagatggagatccagggcctacaggtgatcctgggaatcctggcttacctgga
tatccagggctaactggcagtcctggttttccaggagaaaagggagtaaagggttctgaa
gggcttccagggctacctggtagcaaagaatcatgtaaaggcttgcctgggccaagtgga
gaaccaggaccaagtggttatgaaggacctcaaggacctaatggctttcctggtgagaag
ggaaatcaaggtttgcctgggtttagtattcctggccctgctggtgaacctgggtttcct
gggccatcaagaacaggttcacaaggacatcatggacaaaaaggaatcaaaggacaaaat
ggcctacctggtcaaccaggacccagaggagaccctggaccagatggattgccatcagga
tatggaccagatgggttgcctggaattgcaggtccaccaggtcaaagaggtgaccctggc
ccagatgggcctagaggtcctccaggccccccaggtatgaatggagaccaaggtcccaaa
ggtgccccaggagctccaccacaaaattgtcctgtgaactcaggggaccctggtccacca
ggtaaccctggtctggctggtccaagtggagatcctggcagaaatggatcaaaagggtgg
agaggaaaagtgggagcaccgggggatcctggaccaagaggctcaccaggtgatccaggg
ttggatggattattaacatcaccagggtttaaaggacatcccggagctccaggagatgca
gggctgagggggactccagggccaaagggaataaaaggagatcgaggaataccgggaaaa
ccagggcgagatggtgatcagggtaaaactggttgcaaaggagctactggggaaccaaag
tacaatggagatggaccacctggaccagcaggccaaaagggtgaaccaggattgactaat
actaatttgatgaagggtcagaaaggacaacctggaattgcaggaacagagggtttacca
ggaatttttggactcaagggagacccaggacctactggactaaatggtccctcagggtct
caagggccagaagggtcagatggccctccaggttgcaaagggcaacgcggacctaatgga
ccacaaggtaatgtgggtccaacaggaaatagaggatttccaggtccgaaaggcagccag
ggcttggatgggtttcctggcccagccgggcagaaaggggagactatcttgatagaaggg
agtcctgggaagcgtggtgaccctggtcagccaggtcctcctggaaatcctggcctccct
gggttgtctgttacagggattcctggactaacaggagacaaaggaattccaggtccacat
ggcatccctggcccaagagggtcacctggaagagatggggcatgtcttcctgggtataga
ggagaccctggcgaacctggatatcctgggaggaaaggctactctggcccacctggtcct
ccaggtacagcagggcctgggttaaaaggagacagaggggacccaggtcttccaggaagc
cagggtaatccaggggaaccaggagatccaggcccacaaggaccacctggtgcaataggc
agacctggagtcccagggctaagaggtgacccaggtcttccaggattcccaggacctgct
ggtaaaattggagagcctgggtacatccctggccctcctggtcagccaggggcccaaggt
attcctggaccaccagggcgtaaaggtgaggcaacagttagaacagtgatacttgaacca
ggagctcaaggccctcctggtccccctggcacaccgggacctccaggaagaactggtcca
ccaggaccaccaggcctaccaggccagcgtggtatcaaaggaatgcagggtttcagccca
cctggtctgcctggatttacaggccacaaaggagataaaggaagagcagggctgccaggt
cccgatggcagacctggaactccaggtcataagggtcctgcaggtttgcccggcagaacc
ggtccgacttatgccgacagtttcctgatagtcaggcacagtcagagcatccaccccccc
aaatgtcctcacggcacttgcttcatctacagtggttactctttcctcttcatcaatgga
tataaaagagctcatgggcaggaccttggcaccacggggagctgtctgcctcatttctct
acaatgccttttctgttctgtgacactgaaaatacctgccgctatgcttctcgtaatgac
tattcatactggttgtccactgacactcccatgcctatgaacatggtttccatatcagga
gaaatgctgaaatcctacattagcaggtgctcagtgtgcgaaaccacctccaatgtcata
gccatccacagtcagaggactctcataccagaatgtcctagaggttgggaatcactgtgg
actgggtactctttcatcatgcaaacaggtgctggagcagagggatccacgcagcccctg
atttctcctggctcatgtctggaaaatttccgccaagtgccctttatagagtgtcacggc
agggggacgtgtaactactatcctgattcctatagctactggctggcctccctcgacccc
aacaacatgttcggtaaacccatacctcagacagtgaagggacctttcctagaaagcatc
atcagccgctgccgagtctgcagaaaacccagggcatcaaggtga
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integrated database retrieval system
