Oreochromis niloticus (Nile tilapia): 100696218
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Entry
100696218 CDS
T06104
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100696218 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
onl03041
]
100696218 (sf3b1)
03036 Chromosome and associated proteins [BR:
onl03036
]
100696218 (sf3b1)
Spliceosome [BR:
onl03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
100696218 (sf3b1)
Complex B
100696218 (sf3b1)
Complex C
U2 SnRNP specific factors
100696218 (sf3b1)
Chromosome and associated proteins [BR:
onl03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
100696218 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
100696218
NCBI-ProteinID:
XP_003456320
Ensembl:
ENSONIG00000013758
UniProt:
I3K862
LinkDB
All DBs
Position
LG16:complement(32289216..32306574)
Genome browser
AA seq
1311 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKASLLEDGEQGVGLISTGVFDPEIYEGSDSRFAGYVTSI
AANEQEEDDEDDTSTSLLGQKKPGYHAPVAILNAIPQSDEQYDPFAEHRPQKIAEREDEY
KARRRQMIISPERLDPFADGGKTPDPKLQVRSYVDVMLEQNLSKEEREIRQQLAEKAKSG
DLKAVNGSAAAQAVPKRKRRWDQTADQTPSNATPKKMSSWDQADASAETPGHTPAHTPSN
SRWDETPGRPKGSETPGATPSSRMWDPTPSHTPAGAATPGRDTPGHATPGHGGATGSVRK
NRWDETPKTERETPGHGSGWAETPRTDRGEESVGETPTPGASKRKSRWDETPASQMGSST
PLFTPGKTPIGTPAMELQTPTTAHMTPEQLQAWRWEREIDERNRPLTDEELDAMFPEGYK
VLPPPAGYVPIRTPARKLAATPTPIGGMTGFHMQAEDRTTKQMNDQPSGNLPFLKPDDIQ
YFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFN
QILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG
REIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCK
SKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALA
EAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLIL
IREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQL
VDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLI
DGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAAD
LISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPI
KDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAI
RRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALM
NEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQ
HMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVALGPCRMLQYCLQG
LFHPARKVRDVYWKIYNSIYIGSQDALIAHYPQVYNDDKNVYVRYELEYTL
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaacgcacgaagatatcgaggcccagatcctagagatccagggg
atgaaggcctccctgctggaggatggagagcagggagtgggcctgatctccactggcgtt
tttgacccagagatctatgaaggcagcgacagtcgctttgcaggatacgtcacttccatt
gctgccaatgagcaagaggaggatgatgaagatgatacgtcaacaagcttgttgggacaa
aagaagccagggtaccacgcgccggtggcaatacttaatgccattcctcagtcagatgaa
cagtacgacccatttgcagagcatcgtccacagaagattgcagagcgggaggatgaatac
aaggctcggcgcagacagatgatcatctctcctgagcgtctcgacccctttgcagatggg
ggcaaaacaccggatcccaagctgcaggttaggtcatatgtggacgtcatgttggagcag
aacctgtccaaagaggagagagagattcgtcagcagctggcagagaaggccaaatcaggg
gacctgaaagctgtcaatgggtctgctgctgcccaagctgtccctaaacgtaagcgtcgc
tgggaccagacagctgaccaaaccccctccaatgctacacccaaaaagatgtccagctgg
gaccaagctgatgccagtgctgaaactcctggacatacccctgctcacacaccttcaaac
agccgatgggatgaaacccccggtcgccctaaaggcagtgaaaccccaggggccactcct
agttcccgaatgtgggacccgactcctagccacacacctgccggtgctgccacaccaggc
agagacacgcctggccatgccacacctggtcacgggggagccacaggaagcgttcgcaaa
aatcgctgggatgagaccccaaagactgagagggagaccccaggacatgggagcggctgg
gctgagaccccaagaacagatagaggagaagagtcagtgggcgaaactccgactccagga
gccagtaagaggaagtctcggtgggatgaaacccctgccagccagatgggctcctcaaca
ccactttttaccccaggaaaaactcccataggcacaccagccatggaattgcaaacccca
actacagcacacatgactccagagcagctgcaggcatggaggtgggagagagaaattgat
gagaggaaccgacctctaacagacgaggagctggatgccatgttcccagagggatacaag
gtgttgcctcctcctgcaggctacgtgcctatccgcaccccggcccgtaaactggcagcc
acgcccacacccattggaggcatgacaggcttccatatgcaggcagaggatcgcaccaca
aaacagatgaacgaccaaccctcaggaaatctccctttcctcaaaccagatgacatccag
tactttgacaaactgctggtggaggtggatgagtccactctgagccccgaagaacagaaa
gaaaggaagattatgaagctgctgctgaagattaaaaatggaactcctcccatgagaaag
gctgctctgcgtcagatcacagataaggctcgcgaattcggagcaggtcccctgttcaac
cagatcctgccactgcttatgtcccccaccctggaggatcaggagcgccatcttttggtt
aaagtcattgaccgcattctctacaaactggatgacctggtccgaccatatgttcacaag
atcctggtggttattgagccgctgctcatcgatgaagactattatgccagagtggaaggc
agagagatcatctctaacttggcaaaggctgctggtttagctactatgatctccacgatg
cgacctgatatcgacaacatggacgagtacgtcagaaacaccacagcccgagcctttgct
gttgtagcctccgccctcgggatcccctctctcctccctttcctcaaagctgtgtgcaaa
agcaagaagtcctggcaggctcggcacacaggcatcaagattgtgcagcagatcgccatc
ctcatgggctgcgccattctgcctcaccttcgcagtttggttgagattattgaacatggg
cttgtggatgagcagcagaaggtgaggaccatcagtgccctggctatagctgccctggct
gaagctgccacaccatacggtatcgagtcctttgactcggtgctgaagccactgtggaaa
ggcatcaggcaacacagaggaaagggtctggctgctttcctcaaagctattggttacctc
atcccactgatggatgctgagtatgcaaactactacaccagagaggtgatgctgatcctc
atcagagagtttcagtcccctgatgaggagatgaaaaagattgtgctcaaggtggtgaag
cagtgctgtggcacagatggtgttgaggccaactacatcaagactgaaatcctgcccccc
ttcttcaagcatttctggcagcacaggatggctctggacagacgcaactacagacagctg
gtggacaccacagtggagttggctaacaaagtgggagcagcagagatcatctcacgtatc
gttgatgacctgaaagacgaggcagaacagtacaggaagatggtgatggagaccattgaa
aaaatcatgggcaacttgggcgcagctgacatcgaccacaagctggaggagcagctgatc
gacggtattctgtatgccttccaggagcagacgacagaggattctgtcatgctgaatggt
ttcggtacagtggtgaatgcccttgggaagcgtgtgaaaccctacctgccacagatctgc
ggtacggtactgtggcgtctcaacaacaagtcggccaaggtccgtcagcaagctgctgac
ctgatctcccgcacagccgtggtcatgaagacctgccaggaggagaagctgatgggtcat
ttgggggtggtgctgtacgagtatctgggagaggagtaccccgaggtgctgggcagcatc
cttggagcgctgaaggccattgtgaatgttattggcatgcacaagatgaccccaccaatc
aaagacctgcttcctcgtttgactcccatcctgaagaacagacatgagaaagtccaggag
aactgcatcgacctggtgggcaggatcgccgacaggggtgctgagtacgtgtctgccagg
gagtggatgaggatctgtttcgagttgctggagttgctcaaggcacacaaaaaggccatc
cgcagagccaccgtcaacacgtttggttatatcgccaaagccatcggtcctcatgatgtc
ttggccactctgctcaataaccttaaagtccaggagcgacagaacagggtctgcacgacc
gtggccatcgccattgttgctgagacctgttcgcccttcacggtgctgccggccctaatg
aacgaataccgcgtgcctgagctcaacgtgcaaaacggtgtactgaagtccctctccttc
ctgttcgagtacattggagagatgggcaaagactacatctatgccgtcacgccgctgctg
gaggatgcacttatggacagagacctggtccatagacagacagccagcgctgtggtccag
cacatgtccctcggtgtctacggttttggctgtgaggactccctcaaccacttgttgaac
tacgtgtggcccaacgtatttgagacgtcacctcacgtcatccaggctgtgatgggcgct
ttggaggggctgagggtcgctctcgggccctgccgcatgctgcagtactgcttacagggt
ctgttccatccagccaggaaagtgagggacgtctactggaagatctacaactccatctac
atcggctctcaggacgcactgattgctcactacccacaggtctacaacgacgacaaaaat
gtctacgtccgctacgagctcgaatacaccttgtaa
DBGET
integrated database retrieval system
