Oreochromis niloticus (Nile tilapia): 100696623
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Entry
100696623 CDS
T06104
Symbol
xrn2
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03008
Ribosome biogenesis in eukaryotes
onl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
100696623 (xrn2)
09123 Folding, sorting and degradation
03018 RNA degradation
100696623 (xrn2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
onl03021
]
100696623 (xrn2)
03019 Messenger RNA biogenesis [BR:
onl03019
]
100696623 (xrn2)
03009 Ribosome biogenesis [BR:
onl03009
]
100696623 (xrn2)
03016 Transfer RNA biogenesis [BR:
onl03016
]
100696623 (xrn2)
Transcription machinery [BR:
onl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100696623 (xrn2)
Messenger RNA biogenesis [BR:
onl03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
100696623 (xrn2)
Ribosome biogenesis [BR:
onl03009
]
Eukaryotic type
Pre-60S particles
RNases
100696623 (xrn2)
Transfer RNA biogenesis [BR:
onl03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
100696623 (xrn2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
100696623
NCBI-ProteinID:
XP_005452477
LinkDB
All DBs
Position
LG15:complement(23275444..23320453)
Genome browser
AA seq
996 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVHCVEEKGKECNGVRIPVDTTKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGVELVEEKSRVREEVIQKGGYLPPEEIKERFDSNCITPGTEFMDNLAQCLRYYVAE
RLTNDPGWKNIVVFLSDASVPGEGEHKIMDFIRRQRGQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPRPCGLCGQTGHEIKACQGMPREKQGQHDEFANTMPAAEQE
FIFIRLCVLREYLARELTMASLPFPFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVGIYKDVVHKTGGYLTQNGYVNLERVEMIMQAVGVAEDNIFKKRKDDDENFKRRNKE
KRKRMKAQQQGPAYLTTGQFAPHALGRRDRPEAVQNARHQACDMRMQSNMNAAQSLKAMM
KNGGNSSAGPSDGADSRGVKRKADDSDSEPEPEDNVRLWEEGWKQRYYKNKFDVDATDED
FRRKVVQSYVEGLCWVLRYYYQGCASWKWYFPFHYAPFASDFKDIKDMFSDFEKNTKPFK
PLEQLMGVFPAASGNFLPPTWRNLMSSPDSPIIDFYPDDFAIDLNGKKYAWQGVALLPFV
DERRLRAALADVYPDLTSEEKRRNSLGSDVLFLGKSHPLFDFIHELYRTESNEGTEIPAE
LCHGIQGRLNLDDDPILPDNTVRSPVPMLRDVSQNTAIGVKFKDPPYPDGFVFKAVLLPG
AKIPSKVLKPEDWVRGNGQPWRPQLGFNPNRQQAHLDQSGFRALGHNLNRSQHSGGQYSN
TPPPSSYNQGSYRPSHSGGHQSFQHSRQNSLMGAPPSFHQPQFPRQQQQYRGGGHGWDRA
MQTQQSAYQQNWNRGEGSGRAATSSSTSSSSTSSSSSSSSTMIVVETTGTIAETTGGSTI
RATAPAEVTLSLLHPEDTTGTKLLMMLGFYGTGNCF
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccggcgtttttccgttggctgagccgaaaatatccatcaattattgtgcac
tgtgtggaggaaaaggggaaggagtgtaatggagttcgtattcctgttgatacaacaaag
ccaaaccccaatgaggtggaatttgacaatttgtacttggacatgaatgggatcattcac
ccctgcacgcatccagaagacaaaccggctcccaaaaacgaggacgaaatgatggttgcc
atcttcgagtacattgaccgcctgttcaatatcgtgcggccgaggagagttctctacatg
gccatcgacggagtggctccgcgtgccaaaatgaaccagcagcgctctcgacggtttcgt
gcctccaaagaaggggtcgagttggtggaggagaagagtcgcgtgagagaggaggtcatc
cagaaaggaggttatcttcctccggaggagattaaagaaaggtttgacagcaactgcatc
accccaggaacagagttcatggacaacctggctcagtgtctgcgatattacgtggccgaa
agactcaccaacgatccaggatggaagaatattgttgtcttcctgtctgatgccagcgtc
ccaggtgaaggtgaacacaagattatggacttcatcaggagacagagaggtcagcccaac
catgaccccaacacacatcactgcctgtgtggagccgacgctgacctgatcatgctgggc
ctggccacgcacgagccaaacttcacgatcatcagagaggagtttaaacccaacaaaccg
cgaccttgcggtctctgcggacagacgggccacgagatcaaggcctgccaggggatgccc
agagagaagcaggggcagcatgatgagtttgcaaacacgatgccggcggctgagcaggag
ttcatattcatcagactgtgtgttctgcgggagtacctggccagagagctgaccatggcc
agcctgccttttcccttcgactttgagaggagtgtagatgactgggtctttatgtgtttc
tttgttggaaatgacttcctgccacatcttccgtccttagaaatcagagagggagcgata
gatcgactggtcggaatctacaaagacgttgttcacaaaactggaggctacctgacacag
aacggatacgtcaacctggagcgagttgagatgatcatgcaagctgttggcgttgccgag
gacaacatcttcaagaaacgcaaagacgatgatgaaaactttaagagaagaaacaaagag
aaaagaaaaagaatgaaagcgcagcagcagggccctgcctacctgaccacgggtcagttt
gcccctcatgccctggggagaagagaccgacccgaggctgtccagaatgctcggcaccag
gcctgtgacatgaggatgcagtcaaacatgaatgccgctcagtccttgaaggccatgatg
aagaatggaggcaattcgtctgcaggtcccagtgacggtgcagacagcaggggggtgaag
aggaaagctgatgacagcgatagcgagccggagcctgaagacaacgtcaggttgtgggag
gaaggctggaagcagaggtactacaagaacaagtttgacgtggacgcgacagatgaggat
ttcaggcggaaggtggtccagtcgtacgtggagggtctctgctgggtactgcgctactat
taccagggctgtgcttcttggaagtggtacttcccgttccactacgcaccgttcgcctct
gacttcaaagacatcaaagacatgttctcagactttgagaagaacaccaaaccattcaag
ccgctggagcaactgatgggagtgtttcctgccgccagcggtaacttcctgccaccaaca
tggaggaatctcatgagcagtccggattccccgatcatcgacttttaccctgatgacttt
gccattgatctcaacggcaagaaatacgcctggcagggtgttgccttgttgccttttgtg
gatgaacgtcggctgagggcggctttggctgatgtttaccccgacctcacttctgaggaa
aagaggagaaacagcctgggaagtgatgtgttgtttctggggaagtctcacccactcttt
gacttcatccatgaactgtatcgcacagaatctaacgagggcactgagatccctgcagag
ctgtgccacggaatccaaggtagattaaatctcgatgacgaccctattctgccagataat
acggtgaggtcgcctgttccaatgctgcgagatgtttcacagaacactgcaatcggagtg
aagttcaaggatcccccgtatccagatggctttgtgttcaaggcagtcctccttcctgga
gcaaagattcccagtaaggttctgaaacccgaggactgggtgagagggaacggacaacct
tggaggcctcagctgggtttcaacccaaacaggcagcaagctcacctggaccagtctggc
ttcagggctctgggccacaatctgaacagaagccaacacagtggaggacaatacagcaac
actccaccgccaagcagctacaaccaaggaagctaccgaccttcacacagcggtggccac
cagtcttttcaacattccaggcagaacagtctgatgggagcgcctccctccttccaccag
ccccagtttccaaggcagcagcagcagtacaggggcgggggtcacggctgggatcgggcc
atgcagacgcagcagtcggcgtatcagcaaaactggaaccgtggcgaaggctcgggccgg
gcggctaccagcagcagcaccagcagcagcagcaccagcagcagcagcagcagcagcagc
actatgatcgtcgtagagacgactggcacgatcgcagagacaaccgggggcagcaccatc
agggctacagctccggcagaggttaccctctccctcctccatccagaagatacaactgga
actaaactcttaatgatgttgggattttatggaacggggaactgtttttag
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