KEGG   Oreochromis niloticus (Nile tilapia): 100697508
Entry
100697508         CDS       T06104                                 
Symbol
snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
onl  Oreochromis niloticus (Nile tilapia)
Pathway
onl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:onl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100697508 (snrnp40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:onl03041]
    100697508 (snrnp40)
Spliceosome [BR:onl03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    100697508 (snrnp40)
 Complex C
   U5 SnRNP specific factors
    100697508 (snrnp40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st WDR55 EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 Beta-prop_IFT122_1st ANAPC4_WD40 Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_SPT8 Beta-prop_SCAP Beta-prop_DCAF4 Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st WD40_RFWD3 Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_WDR75_2nd Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Cytochrom_D1 Beta-prop_IFT140_2nd WDR54 Beta-prop_VPS8 WD40_like
Other DBs
NCBI-GeneID: 100697508
NCBI-ProteinID: XP_003444093
Ensembl: ENSONIG00000002305
UniProt: A0A669D1J6
LinkDB
Position
LG22:22361095..22369936
AA seq 347 aa
MIEPMKRAADMAVVPSAVKRPRTELIAAAQSQQLVATGPPRTSSLQAPIMLMSGHEGEVY
CCKFHPNGATLASSGFDRLILLWNVYGDCENYATLKGHSGAVMELHYNTDGSMLFSASTD
KTVGVWDSETGERIKRLKGHTSFVNTCYPARRGPQLICTGSDDGTVKLWDIRKKGAIHTF
QNTYQVLAVTFNDTSDQILSGGIDNDIKVWDLRQNKLIYNMHGHGDSVTGLSLSSEGSYL
LSNSMDNTVRIWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSTDGSKIAAGSADRFVY
IWDTTSRRILYKLPGHAGSVNEVVFHPEEPIVLSGASDKRLYMGEIQ
NT seq 1044 nt   +upstreamnt  +downstreamnt
atgattgagcctatgaagagagcggcagacatggcggtggttccttccgccgtgaagcgg
ccccggacggagctgatagcggcggcgcagtctcagcaactcgtggccacgggccctcca
cggacctccagcctccaggctcccatcatgctgatgtctggccatgagggtgaggtgtac
tgctgcaagtttcaccccaatggagccaccctcgcctcttcaggatttgacagactcata
ttgctctggaacgtgtatggagattgtgagaattacgccacgctgaagggacacagtgga
gcagtgatggagctgcactacaacacagatggcagcatgctgttctcagccagcacagac
aaaactgtaggtgtttgggacagtgaaacaggcgagaggatcaagcgcctgaagggccac
acttccttcgttaatacgtgctacccagctcgccgtggaccccaactcatctgcaccggc
agtgacgacgggacagtgaagctctgggacatccgtaaaaaaggagccatccacactttc
cagaacacctaccaggtgctggctgtgacgttcaacgacaccagcgatcagatcctgtca
ggaggcatcgacaatgacatcaaggtgtgggatctgaggcagaataagctgatctacaac
atgcacggacacggtgactcagtgactgggctcagcctgagctccgaggggtcatacctt
ctctcaaactccatggataacacagtgcgtatttgggatgttcgaccatttgctcccaag
gaaagatgtgtgaagattttccagggcaacgttcacaactttgaaaagaacctgctgagg
tgctcctggtctactgatggcagtaagatagctgcaggctcggccgacaggtttgtgtac
atttgggacaccacatcacgcaggatcctctacaaactgccgggccacgcaggctcggtc
aacgaagtagtcttccacccagaggagcctatagtgctgtctggtgccagtgataaacgc
ctgtacatgggagaaattcagtag

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