Oreochromis niloticus (Nile tilapia): 100698317
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Entry
100698317 CDS
T06104
Symbol
tgfbrap1
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1 isoform X2
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
100698317 (tgfbrap1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
onl04131
]
100698317 (tgfbrap1)
Membrane trafficking [BR:
onl04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
100698317 (tgfbrap1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
TPR-S
DUF7742
Motif
Other DBs
NCBI-GeneID:
100698317
NCBI-ProteinID:
XP_003445767
Ensembl:
ENSONIG00000003210
UniProt:
A0A669CUU9
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Position
LG1:complement(16362893..16375664)
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AA seq
872 aa
AA seq
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MSVKAFELVPAVERDLLMGDKARINIECIECCGKHLYVGTNDCFIHHFLLAEVASSKGKP
GYLAQKLLHKYLGLKKPVAELRAASALERLIVLCEGIVFLVDMVTLETVPSAGGGGAKIR
GVASFCVNENPVNTDPFCVEMGVLSSKRRTVQIYMVYEDRVQLVKELTTPEQPCAVSLDG
YFLCLALTTQYMILNYNTGASQDLFPYNSEERRPIVKRIGREEFLLAAPGGLGMFANAEG
VSQRAPVRWSESVIGAAVCFPYVVALDESFITIHSMLDQQLKQTLSFRDGHILQNFEGKV
ILASTKAVYVLVPLPLERQIQDLLANHRVEEALILTEGAQRNIPKDKFQNLHKRILQQAG
FIQFGQLQFLEAKEHFWKGQLDVRELISLCPLLLPASSSFTRCHPPLHEFADLNHLAQGD
QEKVLQCKKFLISYLGEVRSTEVVNGCREDVDTALLKLYAEQDHESLLDLLASDNACVLA
DSVPWLEKYHKYFALGLLYHYNGQDSAALQLWIRVADGELQDPTRSDLFEYIVDFLCTSS
NVDLVWKYADWALRKDPIIGVRVFTKRHTSKDQPDLNPDDVITYLGKHSQALLLYLENLV
LEKRVQKEKFHTHLAVLYLERVLSLMSQSPKDEEQLTKARERLQALLRESDLYRVQFLLA
KMENREELLLERATLHGKLEEHDKALHILVHQLRDFPSAEAFCLWASSSRDSAYRQQLFH
LLLGVYLDGSPPGQSGDSGELEMAAVDLLNRHGEVFDAVRVLRMLPEGWSLQLLRPFLGR
AIRANMHACRTSRIALGLAHSENLQLLHDRLKECKKPVFVSEKKGCHLCHNTFSEPSVVC
LPGGVPVHTHCVAQRVRDSPTKRQLTNSSKHT
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtgaaggcttttgagctagtccccgctgtggagcgagatctcctcatgggcgac
aaagctcgcatcaacattgagtgcattgaatgctgtggaaagcacttgtacgtgggcacc
aatgactgcttcatccaccactttctgctggctgaggtcgcctcctctaaagggaagccg
ggttacttggctcagaagttgctgcacaaataccttggcctcaagaaacctgttgctgag
ctgcgggctgcttctgctctggagcgtctcatagtgctctgtgaagggatagtgttcctc
gttgacatggtgacgctggaaacggtgccctcggcaggtggaggtggagccaagatcagg
ggcgtggcatcattttgtgttaacgagaacccggtgaacaccgatccgttctgtgtcgaa
atgggcgtgctatcctccaaacggcggacggtccagatttacatggtatacgaggacaga
gtgcagctggtgaaagagttgacaacgcccgagcagccctgtgctgtcagtctcgacggt
tacttcttgtgcctggctcttaccacacagtatatgatcctgaactacaacacgggagcc
tcccaagacctcttcccttacaacagcgaggagaggagacccattgtgaagagaattggc
agggaggagtttctcttagcagcacctggtggtctaggaatgtttgccaatgcagagggg
gtatctcagcgagctccggtcaggtggtcagagagcgtgattggtgccgctgtgtgtttt
ccgtacgtggtggcgttggacgagagcttcatcaccatccacagcatgttggaccaacaa
cttaaacagaccctttcattcagggatggccatattctgcaaaactttgaagggaaggtc
attctggcttctactaaggccgtgtacgtcttagtacctctgccgctggaaagacagatt
caagacttgctggccaatcacagagtggaggaggcgctcattctcacagagggagcgcag
cgaaatattcccaaagacaagttccagaatttgcacaaacgaatcctccagcaggccgga
ttcatacagtttggccagcttcagtttctggaagcgaaagaacacttctggaagggtcag
ctggatgtgcgggagctgatatctctctgcccattactgctaccagcttcctcttcattc
acacggtgccaccctcctctccacgagtttgcagatctcaatcatctggcacagggtgac
caggagaaagtgttgcaatgcaagaagttcctcataagttatttaggagaggtacgaagc
acagaggtggtgaacggctgtagagaggatgtggacactgcactgttaaagttgtatgcc
gaacaagatcacgagagccttttagacctcctggcttcagacaatgcctgcgtgctagca
gacagtgtcccatggctggagaaatatcacaaatattttgcgctgggactgctctatcat
tataatggtcaggattcagcagcacttcagttgtggattcgtgtggcagatggggagctg
caggatcctactagatctgatctttttgagtacattgtggactttctctgcacctcctct
aatgtggaccttgtatggaagtatgcagactgggccctacggaaggatcccatcataggt
gtccgtgtcttcactaagaggcataccagtaaagaccagccggatttgaaccctgatgat
gtcatcacttacctgggaaagcacagccaggcgcttctgctttacttggagaacctggtg
ctggagaaaagggtgcagaaggagaagttccacacacatctggctgtgttgtacttggag
agggtgttatctttgatgtcacagtctccaaaagatgaggaacagctgaccaaagctaga
gaaaggcttcaagccctgctcagggagtccgacctataccgtgtacagtttcttttagct
aaaatggagaaccgtgaagaactgctgctagagcgtgcaacactacatggaaaactagag
gagcatgacaaagcgctgcacattctggtgcaccagctcagagacttcccgtccgccgag
gccttctgcttatgggcctcttctagtagagattcggcgtaccgacagcagctctttcac
ctgctgctgggggtgtatttggatgggagccctcctgggcaatcgggagacagcggagag
ctggagatggcggcggtggacctcctaaatcggcacggggaggtgtttgatgcggtccgt
gtcctgcgaatgctgccagaaggctggtcgcttcagctgctgcgtccttttctgggtcga
gccatcagggccaacatgcacgcctgccgcacgtccaggatcgctttagggctcgcacac
tctgaaaaccttcaactgctgcacgataggttgaaagagtgtaagaaacccgtctttgtg
tctgaaaagaagggatgccacctgtgccacaacaccttcagcgagcccagcgtggtgtgt
ctgcccggtggagtgcctgtccacacccactgtgtcgcccagagagtaagagactctcct
acaaagagacagttgactaatagcagtaaacatacgtga
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