Oreochromis niloticus (Nile tilapia): 100698899
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Entry
100698899 CDS
T06104
Symbol
patl1
Name
(RefSeq) LOW QUALITY PROTEIN: protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100698899 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
onl03019
]
100698899 (patl1)
Messenger RNA biogenesis [BR:
onl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100698899 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
100698899 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
100698899
NCBI-ProteinID:
XP_003457739
Ensembl:
ENSONIG00000004170
LinkDB
All DBs
Position
LG6:38845481..38857924
Genome browser
AA seq
824 aa
AA seq
DB search
MFRFQSLDEDCMLEEEDDGLIEDEDEIDQFNDDTFGAGAIDDDWQEEHKRLAELDERDGL
GAGLGFGGGGMGGDSDLSTSERPSSTRIPSVVHPPPPSSLASLSFSSSSSGLPPSDVEDR
VGEGDLAESLARLILDADPAIAGVGAAKRPGLSPSSSGSGLSALRGLDQPRVLPQPSPIP
PPTQPHQHPQHQLPPGLPASGLPPSSMLSYQQQQHLLRRGTAPMGQMSSHSIWENSMGFG
PVSVAPGLVTHMEGNPLMSIIKEVGHPKRAPQGRNDEDLSERAPPPRSSSPVIGSPPVRA
VPIGTPPKQPMSHALNHQIHHPTAVHVRAPVQHRYPAPFPERLSPNTLLNIANSPLCRGP
FPPRVGPVLSQIQRAQLLNSQVAGFPRGGPPPLLPGGGGFRPFFGGPPPPHGHRMGPRXP
HGPPNHAPPIRHNTTHLHPQHRRMLTQRMQSRGGDRRPGMDRRSRDPYSNLMTQKEKEWV
TKIQMMQLQSTDPYLDDYYYQNYYEKMEKRQEKERDSSKKEHTTKLITPQVAKVEHTYRP
VQFAGSLGKLTVSSVNNPRKMIDAVVTTRSDDEEKREKQVWNKRRQILYTVEKMYSLLLE
VQDFEKCFVQAPEEDRESLLEQHKSNTEQLCSSLREKEWDDRVSDEQCVMIMSVRKGKRL
ISRLLPFLPSTQAAAVVMAIARNLPALAKKDKQDQVLCWLVEPVSAVIQSLSSASLTDLL
QELQGSEGQLATVLHNKFGVTLLYVILSEGERMQSSDPNCQLMDDNRWTELVFSVTRELL
SVPSSSLSPPLFTPPNLLSLFSRYVDRQRLELLQDKLQISALSR
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgatttcagtccctggatgaagactgtatgctggaggaggaagatgatggattg
atagaagacgaagatgaaatcgatcaattcaacgatgacacttttggagccggggccatc
gatgacgactggcaggaggaacacaagcgcctcgccgagctcgatgaacgggacgggttg
ggggcggggctggggttcggaggaggggggatgggaggggactcagacttgagcacaagc
gagcgcccgtcctccacccgaatcccttctgtagtccatccccctccaccatcatccctt
gcttccctcagcttctcctcttcctcatctggactgccgccatcagatgtggaggatcga
gtgggggagggggacttggccgagtctctggccaggctaatcctggacgccgaccccgcc
atcgctggagtcggggcggccaagagacccggtctgtcccccagctcttcaggatccggc
ctctccgccctgcgggggctggaccagcccagagtcctgccgcagccctcccccatcccg
ccccccacccagccacaccagcatccccagcaccagctgcctcccgggctccctgcgtca
ggccttcctccctcgtccatgctcagctaccaacagcagcagcacttgctgcgcagaggc
accgctcccatgggccagatgagctctcacagtatttgggagaacagcatgggctttggc
cccgtgagcgtcgccccgggattggtcacacacatggagggtaatccactcatgtctata
atcaaagaggtgggccatcctaaacgagctcctcagggcaggaacgatgaggatctgtca
gagagggctcctcctccacgctcttcttcccctgtgattggctcccctccggtgagggcg
gtgccaatcgggactccacccaaacagccgatgagccacgcgctgaatcaccagatccac
catcccacagcggtgcacgtgagagccccggtccagcacagataccccgctcctttcccc
gagcgtctgtcacccaacaccctcctcaacattgctaactctcctctgtgtcgcggcccg
ttcccccccagagtcggtcctgttctgtcgcagattcaacgcgcccagctgctcaactct
caggtggcaggatttccccgcggtggtcctcctcctctgctgccaggcggtggaggtttc
aggcccttcttcggaggccctcctcctccgcacggtcaccgaatgggcccccgcncacct
cacgggccccctaaccacgcgccaccgatccggcacaacaccactcaccttcacccacag
caccgccgcatgctcacccagcgcatgcagagccgaggaggggaccgcaggcccgggatg
gaccggcgcagcagagacccctacagcaacctgatgactcagaaagagaaggagtgggtg
acgaagatccagatgatgcagctgcagagcacagacccttacctggatgactactactat
cagaactactatgagaaaatggagaagcgtcaggagaaagaacgagacagcagcaagaag
gagcacaccaccaagctcatcactcctcaggtggccaaggtggagcacacctacagacca
gttcagttcgcaggctctctgggtaaactgacggtctccagcgtcaacaacccccgcaag
atgatcgacgccgtggtgacgactcgctcagacgacgaggagaaacgagagaagcaggtt
tggaacaagaggcgacaaatcctctacacggtggagaagatgtacagtttgctgttggag
gttcaggactttgagaagtgcttcgtccaggcgccggaggaggaccgcgagtctctgctg
gagcagcacaagagcaacacggagcagctctgcagctcgctgcgggagaaagagtgggac
gacagagtgagtgacgagcagtgtgtgatgatcatgtcggtgaggaagggcaagcggctc
atctcccggctcctccccttcctgccctcaacgcaggctgctgctgttgtcatggcaatt
gcccgcaaccttcccgctttagccaagaaggacaaacaggaccaggtgctgtgctggttg
gtggagccggtttctgcagtgatccagtcgttatcgagcgcctcactcacagatctgctc
caggagctccaaggcagcgagggccagctggccacagtgctgcacaacaagtttggcgtg
acgctgctctacgtgatcctgagtgaaggtgagaggatgcagagctccgacccaaactgt
cagctcatggacgacaatcgatggactgagttggtgttttcggtgacgagggagctgctc
agcgtcccctcctcgtccctctctccccccctcttcacccctcccaacctgctctccctc
ttctcgcgctacgtggaccggcagaggctcgagctgttacaggacaagctacagatctct
gctttgtccaggtag
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