Oreochromis niloticus (Nile tilapia): 100699324
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Entry
100699324 CDS
T06104
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100699324 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
onl03041
]
100699324 (prpf4)
Spliceosome [BR:
onl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
100699324 (prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_EML
WDR90_beta-prop_4th
PRP4
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_IFT140_1st
WD_LRWD1
Beta-prop_WDR19_1st
Beta-prop_WDR11_1st
WD40_like
Nbas_N
Beta-prop_WDR35_TULP_N
Catalase-rel
DUF7239
Motif
Other DBs
NCBI-GeneID:
100699324
NCBI-ProteinID:
XP_003453628
Ensembl:
ENSONIG00000012671
UniProt:
I3K4A2
LinkDB
All DBs
Position
LG7:38215047..38226600
Genome browser
AA seq
510 aa
AA seq
DB search
MSDEEDVAPAVKKSRVFYGSLEEKERERLSANVASSTATGSDAVRAGIEAGNINISSGET
LEIEERVSERQQEALAEFERRRRARQITVSTDDAEVKAGLRALGEPITLFGEGPADRRER
LRSVLSVVGPDALKKSRKDEERAKRSQDECQQTWYHEGSPSLKDARLWLARYSLPRAMRR
LEAARAQKEVTEATKTIRQQELHKSLRNLNNFCSQIGDDRPISFCHFSPDSKMLATASWS
GLCKLWSVPDCNLIRTLRGHNTNVGAVVFRPQAGVSLSQSDVSLASCAADGTVKLWNLES
DEPVADIEGHSERVSRVSWHPSGRFLGTTCYDYSWRLWDLEVQEEILHQEGHSKGVHDLT
FHPDGSLAATGGLDAFGRVWDLRTGRCVVFLEGHLKEIYSLHFSPNGYHLATGSGDNTCK
VWELRNRKCLYTVPAHQNLLSAVRFQPTDGHFLLTGAYDNTAKVWSHPGWMPLKTLAGHE
GKVMGVDMSPDGKLIATCSYDRTFKLWLSE
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatgaggaggatgtggctccggccgtgaagaagagcagagttttctatggaagc
ctggaggagaaagagcgggagcgtctgagcgctaatgtggcaagcagcacagcaacagga
agcgatgcagtcagggcgggaattgaggcgggaaacatcaacatctcatcaggggagact
ctggagattgaagagcgggtcagtgagcggcagcaggaagcgcttgctgagtttgagcga
cggcgacgagcccgacagatcaccgtgtccactgatgacgctgaggtgaaagctggcctc
cgtgcgctcggggagccaatcacgttgtttggagagggaccagctgaccgccgcgaaagg
ctgcgcagcgtgctgtccgtggtcggtccagatgctctgaagaaatccaggaaggacgaa
gagcgagcgaagaggtcgcaggatgagtgccagcagacatggtaccacgaaggctccccc
tccctaaaggatgctcggctctggttggccagatattctcttccccgagcaatgaggcgc
ctggaggctgcacgcgctcagaaggaagttaccgaggcaaccaaaacaatccgacaacaa
gagctgcacaagagcctgaggaatctgaacaacttctgcagtcagattggggacgatcga
ccaatcagcttctgtcacttcagccccgattccaaaatgctggctacagcctcctggagc
ggtctgtgtaagctatggtccgtccccgactgcaacctgattcggacactccgaggtcac
aacaccaatgtgggcgccgtcgtcttccgcccccaggccggagtttctcttagccaatca
gatgtcagcttggcctcgtgtgccgctgacggcacagtgaagctgtggaacctggaaagt
gatgagccagtggcagacattgaaggtcacagcgagcgagtttctcgggtgtcttggcat
ccatcaggacggttcctgggaacaacctgctacgattactcgtggcgtctctgggatctg
gaggttcaggaggaaatcctccatcaggaaggtcacagcaaaggtgtccacgacctgacc
tttcaccctgatggttctctggctgctacaggaggcctggatgcgtttggcagggtgtgg
gacctccggacgggacgctgcgtggtgttcctcgagggtcacctgaaggagatctacagc
ctgcacttttcccccaacgggtatcatctggcaacaggaagtggagacaacacctgtaag
gtctgggagctgagaaaccggaagtgtctttacacagtccccgcccaccagaacctgctg
tctgctgtccgctttcaacctacagacgggcacttccttttaacgggtgcgtacgacaac
acggcgaaggtctggagtcatccgggttggatgccgctgaagacacttgccgggcacgag
ggcaaggtgatgggcgtcgacatgtcacctgatgggaaactcatcgccacctgttcctac
gatcggaccttcaaactgtggctgtcggagtga
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integrated database retrieval system
