KEGG   Oreochromis niloticus (Nile tilapia): 100699556
Entry
100699556         CDS       T06104                                 
Symbol
exosc3
Name
(RefSeq) exosome complex component RRP40
  KO
K03681  exosome complex component RRP40
Organism
onl  Oreochromis niloticus (Nile tilapia)
Pathway
onl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:onl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100699556 (exosc3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:onl03019]
    100699556 (exosc3)
Messenger RNA biogenesis [BR:onl03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     100699556 (exosc3)
SSDB
Motif
Pfam: RRP40_S1 KH_6 RRP40_N_mamm Rrp40_N RRP4_S1
Other DBs
NCBI-GeneID: 100699556
NCBI-ProteinID: XP_003443422
Ensembl: ENSONIG00000035455
UniProt: A0A669E3W3
LinkDB
Position
LG2:complement(9765794..9767845)
AA seq 244 aa
MFSTVRERVGEVLLPGDEFSFEAEEKISLTAPVKSEKVVCGPGLRRCGDRLVVFKSGVLR
HKEPNVFWIDSQQRRYVPAKGESIIGIVTAKSGDVFKVDFGGSEQASLSYLTFEGATKRN
RPNVQVGDLVFAQFLIANKDMEPELVCIDSSGRANGMGVFGAGGLLFRVSLGLVRRLLAP
HSDIRSDLEQLFPCELVVGMNGRIWVKSATVQQTLIIANLLQSAETMTAQQRQQLFRKVQ
QGAF
NT seq 735 nt   +upstreamnt  +downstreamnt
atgttttctaccgtgagggaaagggttggggaggtgctgttaccgggggacgagttctcc
ttcgaggccgaagagaaaatttctctgacggcgccggtgaagtcggagaaggtggtgtgc
ggtccgggcctgcggcgctgcggtgaccggctagtggtgtttaagagcggcgtgctgcga
cacaaggagcccaacgtgttctggatcgattcccaacagagaaggtatgtcccagctaaa
ggagagagcatcatcgggatcgtcaccgccaaatctggagatgtcttcaaggtggatttc
ggagggagtgagcaggcgtctctgtcctacctgacattcgaaggggcgaccaagaggaac
agacccaacgtccaggtgggtgacctggtgtttgctcagttcctcatagccaataaggac
atggaaccagagctggtgtgtattgacagctcaggacgagccaatgggatgggagtgttt
ggagcaggaggtctgctattcagagtctctctcggcctcgtcagaaggctgctggcaccc
cacagcgacatccgctcagacctcgagcagctcttcccgtgtgagctcgtggtcgggatg
aacggacgcatttgggtcaaatcggccaccgtgcagcagacgctgatcatcgcaaacctg
ctgcagagtgccgaaaccatgacggctcagcagagacagcagctgttcaggaaggtccag
cagggggcgttctag

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