Oreochromis niloticus (Nile tilapia): 100699591
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Entry
100699591 CDS
T06104
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl04382
Cornified envelope formation
onl04510
Focal adhesion
onl04512
ECM-receptor interaction
onl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100699591 (col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100699591 (col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100699591 (col4a1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
100699591 (col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
onl04147
]
100699591 (col4a1)
00536 Glycosaminoglycan binding proteins [BR:
onl00536
]
100699591 (col4a1)
Exosome [BR:
onl04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
100699591 (col4a1)
Glycosaminoglycan binding proteins [BR:
onl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100699591 (col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
100699591
NCBI-ProteinID:
XP_005457918
Ensembl:
ENSONIG00000014346
UniProt:
I3KA93
LinkDB
All DBs
Position
LG16:complement(20196900..20243507)
Genome browser
AA seq
1636 aa
AA seq
DB search
MLLRSGALLMLAALYLSVDLTGAEGCGASCGKCDCSGVKGAKGELGFPGLQGNMGFPGRQ
GPEGPPGPMGPKGDLGESGAPGLKGVRGPPGLPGFPGNPGLPGINGHDGPPGAPGIPGCN
GTKGERGRDGTPGFPGPQGTPGMPGLPGMKGDPGGLIGIVPMKGEKGYPGTPGRPGQTGI
SGPTGPPGPPGYEGPRGDPGPPGPPGPMGDKLAFEGEKGEKGDKGLQGPPGPPGPTSFEQ
KGSQTVFRGQPGFKGEAGEKGDKGSCIPHLHGIKGDIGPDGPPGKPGKDGDNGLQGEKGV
PGAPGYPGLQGEKGERGPPGGGVGPPGAPGSAGSKGEKGFLGPRGEPGLPGEHIEGPRGE
KGEKGEVGEKGDRGVEGEPLVGPPGQPGNPGPPGPPGPPINPGECNIQKGNRGPPGPPGL
QGEVGQKGDKGDTCVQCEGTSTPGLPGPPGPKGDTGPPGAVGGKGQKGISGQPGQPGRPG
AQGNPGLRGAPGAVGEPGDIFVAPGLKGDKGLPGRNGLPGQPGQDGIPGRDGPPGFPGLK
GEPAREGIKGERGPDGDPGPIGPPGERGPPGLPGFGRPGQTGDKGSQGNPGVPGYPGRPG
EKGEPGIGVSTPGPQGAPGPRGEPGREGPKGDNGLPGDDGLPGFPGEKGEQGPPGIGFPG
PTGPKGSSGIPGAPGLPGEPGRSGKDGGPGSPGPRGPKGEPGRGLPGPKGSQGHQGIPGF
QGEKGNIGLPGVPGREGHTGPPGPQGLKGDLGPPGLPGLVGKPGPPGKGLPGPPGLQGPP
GEPGPYGREGVKGEKGYPGPPGLDMPGPQGEKGVPGFPGVQGTKGLPGPPGLPGRDGLIG
NQGTKGEMGLMGTPGIPGYPGPPGTPGSPGPRGDPGLTGPRGDIGEPGLKGDRGEPGVQG
PPGNMSDVDMEHMKGVKGDKGDIGTPGTSGERGIPGLPGDPGMPGKDGEPGLPGKPGDKG
DSGEPGEPGGMGPPGPKGGTGEMGVPGPSGPKGVKGDLGTPGHPGFRGTDGEKGETGLPG
EPGIGIPGFPGQKGQTGEPGFQGPAGDKGQKGQEGMPGKPGLPGPKGDQGSSGYQGQPGR
PGDKGTPGLPGFVGEPGQDGRPGETGLQGPSGPKGDKGDSGRDGIPGSTGERGQPGMAGI
GFPGPPGELGSKGDKGSPGFPGNPGIPGVPGVKGDKGFPGPQGPQGQPGEQGPSGFSLEG
PKGDRGGTGQPGEAGIPGQPGPAGFPGRDGQKGEKGDQGLQGFQGESGIKGDSGLPGLPG
APGLPGLDGPKGEVGLQGVTGFPGQKGEAGDLGYRGEAGDRGFPGEKGNEGPPGPPGPQM
FIKGDIGFPGNQGLPGPQGPSGLPGQKGDRGVTGFPGPKGEEGFPGYNGQNGVKGEPGFP
GPQGPRGHPGPPGPNGVPGPAGPPGPSSMDHGFLVTRHSQSVDIPLCPDGTSLIYDGYSL
LYVQGNERSHGQDLGTAGSCLKKFSPMPFLFCNINNVCNFASRNDYSYWLTSPASMPMNM
APITGENIKPFISRCAVCEAPAMVIAVHSQTIMIPPCPGGWDSLWIGYSFVMHTSAGAEG
SGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDNEMFTKPVPATLKAG
SLRTHISRCQVCMKRT
NT seq
4911 nt
NT seq
+upstream
nt +downstream
nt
atgctgttacggtccggcgcgctcttaatgctggcggctctctacttgagtgtggatctg
acaggagctgagggctgtggtgcatcatgtggaaaatgtgactgcagtggtgtgaaagga
gcaaagggtgagcttgggtttcctggtcttcaaggtaatatgggattcccagggaggcag
ggacctgaggggcctccagggccaatgggccccaagggagatctgggtgagtccggggct
cctggattgaaaggagtcagaggacctcctggtctgccaggtttcccaggcaacccagga
cttccaggcatcaatggacatgacggtccacctggtgcgccaggtatcccaggatgcaac
gggacaaaaggagaaagaggaagagatggaactccaggtttccctggtcctcaaggaaca
cctggaatgccgggacttcctggaatgaagggtgaccccggtggtttgataggaattgtt
cccatgaaaggagagaaaggatatcccggcacacctggccgacctggacaaactggcatc
tccggacctactgggcctccaggacctcctggctatgaaggacccagaggtgatcctggc
cctcccggccctcctggaccgatgggagataagctggcctttgagggtgagaaaggagaa
aagggtgacaaaggacttcaaggcccacccggccctcctggacccacatcattcgagcag
aaaggatcacaaacagtttttcgtgggcaaccggggttcaaaggagaagcaggggagaaa
ggcgacaagggctcctgcatcccacatctgcacggcatcaaaggcgatattggcccagat
ggaccaccgggtaaacctggcaaggatggagacaatgggctacagggagaaaaaggcgtt
cctggagccccaggataccctggtttacagggtgaaaaaggagaaaggggaccacctggt
gggggtgttggccctcccggcgctcctggttccgcaggttcaaaaggagagaaaggtttt
cttggtcctcggggagagccaggtctaccaggcgaacacattgaagggcctcgtggagag
aagggtgagaaaggagaggtgggcgaaaagggagacagaggtgtggaaggagagcctctt
gtcggacctccaggacaaccggggaaccctggtcctcctggaccacccggaccaccaatc
aaccctggtgaatgtaacattcagaaggggaatcgtggcccacctggacctccagggcta
caaggggaagtgggacagaaaggtgacaaaggggatacctgtgttcagtgtgaaggcacg
agcacacctggattacctggtcccccaggtcctaaaggagacacaggacctcctggtgca
gtaggcggtaaaggacaaaagggtatttctggacaacctggacaacctggacgacctggt
gctcaaggaaatcccggattaagaggggctcctggtgctgttggtgaaccaggggacatt
ttcgtggctcctggtctgaagggggacaagggtctgcctggtcgtaatggattacctgga
cagccggggcaggatggaataccaggaagagatggtccaccaggatttcctggccttaaa
ggagaacctgccagagagggcatcaagggtgaacgtggaccagatggtgatcctggtcct
attggccctccaggagagaggggtccccctggtctgccaggctttggtcgaccaggacag
actggagataagggcagtcaggggaatccaggagttcctggatatcctgggcgacctggt
gagaaaggtgagccagggataggtgtgagcactcctggtcctcagggtgcacccggacca
cgaggagaaccaggcagagagggacctaaaggtgacaatggccttccaggagacgatggg
ttgccaggttttccaggagaaaagggtgaacaaggacctcctgggattggatttccaggc
ccaactggccctaaaggaagcagcggaattccaggagcccccggattaccaggagaacca
ggaagatcaggaaaggatggcgggccaggatctcctggtccacgtggaccaaagggtgaa
cctggacggggacttccgggtcccaaaggttcacaaggccaccaaggaattcctggcttc
cagggagagaagggcaacatcggattacctggtgttcctggacgagaaggacatacaggc
ccacctggacctcagggtctcaaaggtgatctgggacctcctggacttcctggactggtt
ggcaaacccggtcctccaggaaaaggattgcctggacctcctggactacaggggcctcct
ggagagcctggtccttatggtagggaaggtgtaaagggggaaaagggctacccaggtcct
cctggtctagacatgccagggcctcagggagagaaaggagtccctgggtttccaggagta
caaggaactaaaggactgccagggcctccaggtttaccaggcagggatggactcattgga
aaccaaggtactaaaggtgaaatggggttaatgggaacacctggaataccgggatatcct
gggcctcccggtacacctggatctcctggtccgagaggtgatcctggtcttactggacca
agaggtgatattggagagcctggactaaaaggtgacagaggagagccgggtgttcaggga
cctcctgggaacatgagtgatgttgacatggagcacatgaagggagtgaagggagacaaa
ggagacataggtaccccagggaccagtggagagaggggcatacctggattgccaggagat
cctggaatgccagggaaagatggagagcctggattacctggaaaacctggtgacaaagga
gactctggcgaacctggagagcctggcggtatgggaccacctggaccgaagggtggcaca
ggggagatgggagtaccaggtccatctggtccaaagggtgtcaaaggagatttaggtaca
cctggacatcctggattcagaggcacggatggagaaaagggagaaacaggattacctggt
gagccaggtattggcatcccaggatttccaggacaaaagggtcagactggtgagccagga
ttccaaggaccagctggagataagggtcagaaaggccaagagggcatgcctggcaagcca
ggactgccaggacccaaaggagaccaaggaagctctgggtatcaaggtcagccaggtaga
ccaggggacaagggtacccctggacttcctgggtttgtaggagagcctggtcaagatggc
cggcctggcgaaactggcctgcaggggccttctggtccaaagggagataagggagattct
ggacgtgatggaatcccagggtccacaggagagagaggacagccaggtatggctggaata
ggttttcctggtccgcctggcgagcttggcagcaaaggagacaaaggcagtcctggcttt
cctggcaacccaggtattccaggtgtccctggtgtgaaaggtgataagggatttcccggc
ccacagggacctcaaggacagccaggagaacagggtccctcgggtttctctctagaagga
cctaaaggagataggggaggaacaggacaacctggagaagcaggaatcccaggacaacca
ggacctgctggttttccgggcagagatggacagaagggagagaaaggagatcagggtctc
cagggtttccagggagagtcgggaataaagggggattctggattacctggactgccggga
gcacctgggcttccaggtcttgatggaccgaagggagaggtaggattacagggtgtaact
ggcttcccaggacaaaagggtgaagctggagaccttggatatagaggagaagctggagac
agaggattcccaggcgaaaaaggtaacgaaggccctcctggtcctcccggccctcaaatg
ttcataaaaggagacattggcttcccaggaaatcaaggtttaccgggacctcaggggcca
tctgggctcccaggacagaaaggagatagaggtgtgacaggttttccagggccaaaaggc
gaagaaggtttccctggatataatggtcagaacggggtcaaaggagagcctggctttcca
gggccacaaggacctagaggacaccctggcccccctggacctaatggtgtgccaggccca
gctggtccacccggcccctcgtccatggatcacggtttccttgtaacacgtcacagccaa
tcggtggacatcccattgtgtcccgatggaacctctctcatatatgatggctactccttg
ctctacgtccagggcaatgagcgctctcatgggcaagacttaggtacggcaggcagctgt
ctaaagaagttcagccccatgcccttcctcttctgtaatatcaacaatgtgtgtaacttt
gcctcccgtaatgattactcctactggctcacctcacctgcgtccatgcccatgaacatg
gcacctatcactggtgaaaacattaaacccttcatcagtaggtgcgctgtatgtgaagct
ccagccatggtgatagcagttcacagtcagaccattatgatcccaccgtgccctggaggc
tgggactctctgtggatcggctactcctttgttatgcacaccagtgctggtgctgagggt
tcgggccaggctttggcttctcccggttcctgtctggaggaattccgcagtgctccattc
atcgagtgtcacggtcgaggaacctgcaactattacgccaactcctacagcttctggctc
gctaccattgaagacaatgaaatgtttacgaaacccgtcccagcaacgctaaaagccggc
agcctccgaacacacataagccgctgtcaggtttgcatgaagaggacataa
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integrated database retrieval system
