Oreochromis niloticus (Nile tilapia): 100699811
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Entry
100699811 CDS
T06104
Name
(RefSeq) collagen alpha-1(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl04510
Focal adhesion
onl04512
ECM-receptor interaction
onl04518
Integrin signaling
onl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100699811
04518 Integrin signaling
100699811
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100699811
09142 Cell motility
04820 Cytoskeleton in muscle cells
100699811
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
onl00535
]
100699811
Proteoglycans [BR:
onl00535
]
Extracellular matrix (ECM) proteoglycans
Others
100699811
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
100699811
NCBI-ProteinID:
XP_005474109
Ensembl:
ENSONIG00000009778
UniProt:
I3JTU0
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All DBs
Position
LG13:complement(20645593..20666962)
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AA seq
925 aa
AA seq
DB search
MDGIERNILLYSLCCCYVIPLCLCTGLHSQTVRFSSQVGIHLEQQSMCPQISIGEDHFPG
FYIMSQFHIAELARRGTVKKVAGPSPQNVAYQIGPAFNFGINTRSAYPLGLPEEFAFVAV
LRMSGSTVNQNWNIWQMQDVNGDEQMAVRLNWESKSLEFTFTALNGGRQTVVFSPLGFLF
NDQWHRVFLEISRDSVALFADCVLIDSQDIPPRLEVSLDGFTLIGKLKDNPVVAVPFELQ
SMLIHCDVTRARKEGCYDLPAGASTDVAEVLNNQGPPGPPGPAGVPGIDGIAGERGDDGE
DGPPGPDGDAGKPGSGGLPGIPGNDGLTGPIGDPGPDGPPGQKGEPGKPGPRGAAGVGPD
GPLGPPGPGGLPGELGKAGPPGAMGVRGPQGPRGPAGPRGASGVLGSTDLCPNSCPPGTS
GHPGLPGMKGHKGAKGEAGEPGKQGHKGAEGEQGSPGEVGAQGPRGSQGIRGAMGMMGPK
GEGGPRGPDGDSGPQGVAGAAGDVGQRGAMGEPGPKGEQGGPGLRGLTGVPGPKGESGLP
GVDGREGIPGMPGAKGSVGKPGIPGEVGLQGLPGLPGVPGPKGTSGPKGDAGNPGLFGAI
GSAGKPGERGEQGELGSVGPIGEPGDRGQQGPAGPAGKPGPRGPKGDPGLPGLPGPPGLP
GIKGERGDRGELGPKGEQGVQGDEGNPGEKGDAGDSGEPGLKGEVGNPGETGRIGPEGSR
GQPGIEGPPGTPGPRGMQGNRGPPGVRGTQGPAGKQPSDQHIKQVCMRVMQEQLAQLAAS
LRRPESGIAGLPGKPGPPGPPGPPGDNGFPGHAGSRGLPGLKGPPGQMGAKGPKGDMGDR
GARGPIVRGPKGQPGPPGLPGEPGRPGYGRDGQDGQRGPPGIPGQLGVPGPPGPAGPNGY
CDPSACNLQAGAAQQSLDVKGPAGN
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atggatggaatcgaaagaaatatcctgctctattcattgtgctgctgctatgtgatccca
ctgtgcctctgcactggacttcattcccagactgtgagattttcatctcaagttggtatt
catttggagcagcagtctatgtgccctcagatcagcattggggaggatcatttcccagga
ttttatatcatgtcacagttccacattgctgagctggcaagaaggggcactgtgaaaaag
gtggctggaccatctcctcagaatgttgcttatcaaataggcccagcattcaacttcgga
atcaacacaagatcagcctatccgcttggattgccggaggagtttgcctttgtggcagtg
ctgcgcatgagtggcagcaccgtaaatcaaaactggaatatctggcaaatgcaagatgtg
aacggcgacgagcagatggccgtcaggctcaactgggagtccaagtcgttggagtttact
ttcacggcgctcaacggggggaggcagactgttgttttcagccccctggggtttcttttc
aatgaccagtggcacagagtgttcctggaaatcagcagggactctgtggcccttttcgct
gactgtgtcctgatcgattctcaggatattccacccagactagaagtcagccttgatggc
ttcacgttaataggaaagctcaaggataacccggtggtagcagttccgtttgaactgcag
tcaatgctgattcactgcgatgtgactcgagcccggaaggaaggatgttatgacctccca
gccggggcatcgacagatgtggcagaagtgctgaataaccaaggaccccctggcccccct
ggacctgcaggagtcccaggaattgacggtattgctggagagaggggagacgatggcgag
gacggtcctcctggacccgacggagatgcaggtaaacctggctctggaggattacctgga
attcctggaaatgatggtttgacaggccccattggagatcctgggcctgacggtcccccc
ggacagaaaggggaacctgggaaacctggacctcgtggagcagctggtgttgggccagat
ggaccccttgggccaccgggacctggaggacttccgggtgaactgggaaaagctggacca
cctggggccatgggtgtgagagggccacagggacctcgtggaccggcggggcccagaggt
gcttctggagtgcttggcagcactgatctgtgtcccaactcctgtccacctgggacctcg
ggacatcctggtcttcctggcatgaagggccacaaaggtgcaaagggtgaagcaggagaa
cctgggaaacaaggacacaagggggcggagggagagcagggaagtccaggggaggttgga
gcccaaggaccgaggggatctcagggaattcgtggagctatgggaatgatgggcccaaaa
ggagaggggggacctcgaggtcctgatggagattcaggtccacagggcgttgcaggggca
gctggggatgtaggccaaagaggtgctatgggtgaacccgggcctaaaggcgaacaaggt
ggtccaggactgagaggactcacaggcgttccaggccccaagggcgagtctggcttacca
ggtgtggatggtcgtgagggtattcctggaatgcctggagcaaagggaagcgttgggaag
ccgggcatccctggagaagttggacttcaagggcttccaggtttgcctggtgtacctgga
ccaaaaggcacaagtggccctaagggagatgctggtaacccaggcctttttggagcaata
ggatctgctggcaaacccggtgagcgtggagaacagggagagctgggatctgtcgggccc
attggtgagcctggagatagaggacagcaaggtcctgcaggtccggctggaaagccaggt
ccccggggacccaaaggtgaccctggtcttcctggtctcccaggtcctcctggtctgcct
ggaataaaaggagaaaggggagatcgtggagaactaggacccaaaggagagcaaggagtt
caaggtgatgagggaaatccaggagaaaagggggatgctggtgactcgggagaacccgga
cttaaaggagaagttggtaaccccggtgagactggcagaataggtcccgagggaagtcga
ggacagcctggcattgaaggaccacctggcacacctggaccacggggcatgcagggaaac
agaggcccacctggagtcagaggaactcagggtcctgcgggtaaacagccaagtgatcag
cacatcaaacaagtttgcatgcgagtcatgcaagaacagctggctcagttagctgctagt
ttaaggaggccagagtctggcattgctggtttacctggaaaacccgggccaccggggcct
cctggtcctccaggagacaacggcttccccgggcatgctggctcaagaggccttccagga
ctcaaagggccaccaggacagatgggagcaaaaggacccaaaggtgacatgggagacaga
ggggccagaggacccattgttcgaggaccgaaaggtcaaccaggaccacctggacttcct
ggggaaccgggaaggcctggttatggccgtgatggtcaggacgggcagaggggacctcct
ggcattcctggacagctcggtgtgcccgggcctccaggtccagccggtcctaatggttac
tgtgacccatcagcctgcaaccttcaggcaggagctgcgcagcagtccttggatgtgaag
ggacctgcaggaaactaa
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