KEGG   Oreochromis niloticus (Nile tilapia): 100700212
Entry
100700212         CDS       T06104                                 
Symbol
ufd1
Name
(RefSeq) ubiquitin recognition factor in ER-associated degradation protein 1
  KO
K14016  ubiquitin fusion degradation protein 1
Organism
onl  Oreochromis niloticus (Nile tilapia)
Pathway
onl04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:onl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    100700212 (ufd1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:onl03009]
    100700212 (ufd1)
Ribosome biogenesis [BR:onl03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    100700212 (ufd1)
SSDB
Motif
Pfam: UFD1_N1 UFD1_N2 CDC48_2
Other DBs
NCBI-GeneID: 100700212
NCBI-ProteinID: XP_003451086
Ensembl: ENSONIG00000014395
UniProt: I3KAF4
LinkDB
Position
LG12:25884603..25889196
AA seq 310 aa
MFSFHVFEHQLARGFQNRFSTQYRCYSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLN
ITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLMVA
TYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAV
SIIECDMNVDFDAPLGYKEPERRPNHQDEPTEEETDPSSYADMDTGFRAFTGSGNRLDGK
TKGIEPSPAPIAPSDIKRGIPNYDFKIGRITFIRNSRPQPKKIVDDDDAMNRFIAFSGQG
QSLRKKGRKP
NT seq 933 nt   +upstreamnt  +downstreamnt
atgttttccttccatgtgttcgagcaccagctggcccggggctttcagaaccgtttctcc
actcagtatcgttgctattcggtgtccatgctggctggacccaacgaccgctccgatgtt
gagaaaggaggcaaaataataatgccaccttcagctctcgaccagctcagcaggcttaac
attacctatccaatgctgttcaagctgaccaacaagaactcagacagaatgacacactgt
ggtgtcctggagtttgtggcagacgagggaatctgttacctacctcactggatgatgcag
aatctcctgttagaggaaggcggtctcgttcaggtggaaagtgtcaacctcatggtggcc
acttactcaaagttccagcctcagagccccgacttcctggacattacaaaccccaaagca
gtactggagaacgcactgagaaactttgcatgcttgacaactggtgacgtcatagccatt
aactacaacgaaaagatatatgagctgcgagtaatggagaccaaaccagataaagcagta
tccatcatcgagtgtgatatgaatgtggattttgatgctcctttgggttacaaagagcct
gaacgacggcctaatcaccaggatgaaccaacagaggaagaaacagatcccagcagttat
gctgacatggacacaggcttcagagctttcaccggttctggtaatcgtttggatggtaaa
actaaaggaattgaacccagccctgctcccatcgccccaagtgacattaaaagagggatt
cccaactatgacttcaaaattggcaggatcaccttcattcgaaactccaggcctcagccc
aagaaaattgtggatgatgatgatgccatgaacagattcatcgccttctctggacaaggg
cagtcactacgcaagaagggccgaaagccttga

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