Oreochromis niloticus (Nile tilapia): 100700422
Help
Entry
100700422 CDS
T06104
Symbol
helz
Name
(RefSeq) probable helicase with zinc finger domain
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
onl
Oreochromis niloticus (Nile tilapia)
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
onl03019
]
100700422 (helz)
Messenger RNA biogenesis [BR:
onl03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
100700422 (helz)
3'-5' decay
Other 3'-5' decay factors
100700422 (helz)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
zf-CCCH
AAA_19
AAA_30
UvrD-helicase
ResIII
PAM2
AAA_22
zf_CCCH_4
PhoH
AAA_16
Mov-10_helical
zf-CCCH_4
TPR_1
Motif
Other DBs
NCBI-GeneID:
100700422
NCBI-ProteinID:
XP_003458368
LinkDB
All DBs
Position
LG6:complement(28487901..28539211)
Genome browser
AA seq
2028 aa
AA seq
DB search
MADRRAEKSCEEASRSLARREYEAAVSHSTDALVVLAPQPPSSSTPIPLSPPSLVAAAGP
LRSRALLYRIAAFLQLKNYDEADEDCKHVLAEEIARGDGSLQANLRSMLLDGSLREVASI
LSKALYGEPMNGIVAKDLSRLKMLLSEIEAVKGEMAPEYTDDQDEEVQDGWRFRPPPRGV
TSSEEYTLCKRYLEQGLCRYGAQCTSAHSQEELMEWQKRYASRLIRLKQQQESKHFTENY
METLIEKWMNSLSPEKVLSDCLEGVNVETTSSLSVTVTTKKSSHSWVFSLLCKPPRKLYR
IALLYDAHRPHFFITGVSAGERLQGVPKGCQEWTPGEETAVAADNGLDHCVYKVAVGFST
EIFGTFRQTIVFDFGSEPVLMQRIMVDAASIEDLEHLLAARQQLLMTAKRWDSSCKTIVE
FSPNETMAELERSLLSRYQIPLSADQLFTQSVLDKTLTKDNYQARLHDLLYIEEIAQYKE
VSKFNIKVNLQLVTSFMLTGISVGAKYAQNGQLFARFKLNETLSEDTLAGRLVMTKVNSV
LLLPLGREAVNSQPPPGVKERVYEAVIEEKTKDYIFLRICKDCCEELGLQPDRELQVELQ
FQLNRLPLCEMHYALDRIKDNTILFPDVSLVPTIPWSPNRQWDEQLDPRLNAKQKEAILA
ITTPISIPLPPILIIGPYGTGKTFTLAQAVKHILRQDHSRVLICTHSNSAADLYIKDYLH
PYFEAGNQHARPLRVYFRNRWVKTVHPVVQQYCLISNTQVTFQMPTREDILRHRVVVVTL
STSQYLCQLDLEPGLFTHILLDEAAQAMECETIMPFALASKTTRIVLAGDHMQLSPFVYS
EFARERNLHVSLLDRLYEHYPPEFPCRILLCENYRSHEAIINYTSELFYDGKLMASGKQP
SHKDFYPLTFFTARGEDVQEKNSTAYYNNAEVFEIVERVEELRKKWPVAWGKLDEGSIGV
VSPYADQVFRIRAELRKKRMPEVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTAIKRK
EQLVEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSVGRCRKFWEHFISICH
ENSSLHGITFEQIKAQLEALELKKTYVLNPLAPEFIPRALRPLQGHHSSSQALHPHHHPH
SQHAQPASNKQGPQQQQQSPPKGKHANHTEHLPPEGYVQPNPAVLMGNPIRAFTPPLGGT
PAGMGKSPSPVQRIDPHTGASILYVPAVYGGNMVMPMPLHLPWPGYQNRFAVDPRIMGHP
AAMAYNFNLLQPPNRGSPIPYSGVAHPSPLGLTQPSPDKEPSDPIRNGKLEGCSKSEQNH
LQTPERKTTDMKEKQGDLDTGQSRSLDSQTESLVGFPNPLLHRKDPSAAQRPLNFQLAPP
TTPFPSNPISGRTFPQQYPVTRLPYRVSQPQHPGMAQQNQQQQQQLSPAYTGGSHNASFF
SGPIPTHRPVQSPTLNGPDSGGVEEMSSSVRTPMGHPVGHHSGLSQHNRVSSFGEEGQDG
NPGDGLDLQGPLALEALSQQQQQAARLGQWGEAASPFIQASVAFPLPQQLAHLAQSNMAR
FPHQLLRAGNWGLSSNLDDEAVPSASTGPTFSRYPGLLREMAPQEQPEPREAVEMQPPPQ
SRLLQYRQSQPRGSGDPSSSLGAISNQAGPFPSGLYPHDTGRDLLNENLLNNQGLQQHPG
NPLYNTGSFPHQPPAQSASPPPAQVKYLLQEAQWPHGGATVSPPQQNPLMGNQGHGLPYG
LPIMAHPSRQEQVHLMQLHHQHQQQQQQQQQQQQQQQQQQQQQQQQNQGPDQESYHPLSP
RTSAATAHHNVDEYEPRGPGRPLYQRRISSTYPDESSPANTHNTLSQQSQPCASDTQDHP
HPHIQHHQHPHAPYSYPSHDHLWPSNGGGPGPFQNIPCNGAGTLAQHRDLLASKALRQAE
EQAKAEAAGTQQTHPHSLNSLQHQFPPLMPNNKQQPQPQPQPPTEPSEGAPNLGKQPTMS
YASALRAPPKPRAVRPEQVKKNSDPLSLLQELSIGSSNGSNGYYSYFK
NT seq
6087 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaggagagcggagaagtcatgtgaagaagccagtagatcgttagccaggcgg
gagtacgaggcggcagtcagccatagcacggatgccctggtggtccttgcaccccaaccc
ccatcctccagcacccccatcccgctgagccctccatctcttgtcgccgccgccggaccc
ctccgcagccgtgccctgctctaccgaattgctgccttcttgcagctgaaaaattatgat
gaagcagatgaagactgcaaacatgtcctggcagaagaaattgccaggggagatggttca
ctacaggcgaacttgcgctccatgctgttggatggcagcctgcgggaggtggccagcatc
ctgtctaaagccttgtatggagagccaatgaatggtattgttgcaaaagacctgagcaga
ttaaaaatgctgttatctgaaatagaggctgtaaaaggggagatggcaccagaatacaca
gatgaccaggacgaagaggtccaagatggctggcggttccgaccacctccgagaggagtc
acgagcagtgaggagtacaccctttgtaaaaggtacttggagcagggcctgtgtcggtat
ggggcccagtgtacatccgctcattcgcaagaggagcttatggagtggcagaagcgctat
gcttcacgcctcatccgcctcaaacagcagcaggagagtaaacacttcaccgaaaactac
atggagaccttaatagagaagtggatgaactccctttctccagagaaagtgctaagtgac
tgtttagaaggagtgaatgtagagaccacctctagcctctctgtcaccgtcaccaccaaa
aaatcctcccactcctgggtcttctccttgttgtgcaagccgcctagaaagctgtaccgg
attgctctcctctatgatgcccaccgaccacacttcttcatcacaggcgtgtcagctgga
gagcggcttcaaggtgttcccaaaggctgccaagagtggactccgggggaggagacagca
gtggcagcagacaatggcctggaccactgtgtctacaaggtcgcagtgggtttcagcaca
gagatctttggtaccttccgacagaccattgtttttgactttggttcagaacctgtgcta
atgcagcggatcatggtggatgctgcctctattgaagacttggagcacctgttggcagcc
agacagcaactcttgatgactgcgaaacgctgggactcatcctgtaaaaccattgttgaa
ttcagtcccaatgagacgatggctgaactggagcgcagcctcctttcccgctatcagata
cctctatcagctgaccagctcttcacccagtcagtccttgacaagactctgaccaaagac
aactaccaggcccgactgcacgatctgctctacatagaagagattgcacagtacaaagaa
gttagcaagtttaacatcaaggtgaacctgcagctggtcactagctttatgctgactggc
atttctgttggagcaaagtatgctcagaatggacagctttttgcacgcttcaaactcaat
gaaacactttctgaggacacactggctgggcggctagtgatgaccaaggtaaattcagtt
ctgctgctacctttgggccgtgaagcggtcaacagccagccgcctcctggagttaaagag
cgtgtttatgaggctgtgattgaggagaagactaaggattacatctttctaaggatctgc
aaggactgctgcgaggaactcgggctgcagcctgacagagaactacaggtggagctccag
ttccagctgaacagactgccactctgtgagatgcattatgccctggatcgcatcaaagat
aataccatccttttccctgatgttagccttgtccctactatcccctggagtcccaacagg
cagtgggatgagcagttggatcctcgtctgaatgccaaacagaaagaggccatcctggcc
atcaccacacccatctctatccctttgccccccattcttatcattgggccctatggtacc
ggcaagaccttcaccctggcacaggctgtaaagcacatcctccgccaagaccacagcagg
gtcctgatctgcacccactccaacagtgcggctgacctttacattaaggactaccttcat
ccttattttgaagcaggcaatcagcatgccagacctctcagggtatacttcaggaaccgc
tgggtgaagacggtccacccagtggtccagcagtactgtctcatctccaacacacaggtc
actttccagatgcccacaagggaggacatcctcaggcaccgcgtggtggtggtcaccctc
agcacctcccagtacctctgccagcttgacttggagcctggtttgttcactcatatccta
ttggatgaagcagcccaggccatggagtgtgaaaccatcatgccttttgctctagctagc
aagacaacccgcatcgtgctggccggagaccacatgcagctcagtccatttgtgtacagc
gagtttgcacgggagcgcaacctacacgtgtccctgctggatcgactgtatgagcactac
ccccctgaattcccctgtcgtattctcctgtgtgagaactaccgctcccatgaagctatc
atcaactacacgtcagaattgttctatgatgggaagctaatggcaagtgggaagcagccc
tcccataaggacttctaccctctgaccttcttcacagcaagaggagaagatgtccaggag
aagaatagcactgcctactacaacaatgctgaggtatttgagatcgtggaacgggtggag
gagttgcgcaaaaagtggccagtggcctgggggaagctggatgaaggcagcattggggtg
gtgtcaccatatgctgaccaggtgttccgcattcgcgctgagctacggaagaagagaatg
cctgaggtcagcgtggaaagagtgctcaatgtccaaggtaaacagttccgggtgctgttc
cttagcacggtgcgtacacggcatacctgcaagcacaagcaaacggccatcaagcgcaaa
gagcagctggttgaggactcgacagaggaccttgactatggtttcctgtccaactacaag
ctgttgaatacagccatcaccagagcccagtccttggttgcagttgtgggagatcccatt
gcgctatgttctgttgggcgttgcagaaaattctgggagcactttatttccatttgccat
gaaaactcgagccttcatggcatcaccttcgagcagattaaggctcagctggaggccctg
gagctcaaaaagacctatgtcctcaacccattggccccagagttcatccctcgtgccctt
aggcccctgcaaggacaccattcgtcttcacaggccctccatccccaccatcatccacat
tctcagcatgcacagccagcctccaacaagcagggcccccagcagcagcagcagtcacct
cctaagggtaaacatgcaaaccacacagagcatctcccacctgaaggatatgtccaacca
aacccagcagtgttgatggggaaccctattcgggcattcacaccacccttgggtggcaca
ccagctggtatgggcaagtcacctagtcctgtgcagaggatagatccgcatacaggtgcc
agtatcctctacgttccagctgtatatgggggaaacatggtcatgcccatgcccctgcat
ttgccctggccaggttaccagaatcgctttgctgtggaccctcgcatcatgggtcatcca
gcagccatggcttacaactttaatctgctgcagccaccaaatcgaggctcccccattcct
tatagtggggtagcacacccctctcctctaggactaacccagccgagcccagacaaagag
ccttctgaccccatcagaaatggtaaattagaaggatgttcaaagtcggagcagaaccat
cttcagacaccagaaagaaaaaccacagacatgaaggaaaaacagggagatttagacaca
ggccaaagtcgaagtctagattcacagacagaaagcctagttggatttcccaaccctctg
ctccaccgaaaagacccctcagctgcccaaagacctcttaacttccaacttgcgccacct
actacaccctttccttcaaatccgatcagtggaagaaccttcccccagcagtatccagtc
actaggcttccttatcgggttagccagcctcaacacccagggatggcccagcaaaatcag
cagcagcaacagcagctcagtcctgcctacactggtggaagccataatgcttcttttttc
agtggccctatacccactcacagacctgtccagtcgccgactttgaatgggccagactct
ggaggagtagaggaaatgagtagctctgttaggactccaatgggccacccagtaggccac
cactcaggcctatcacagcataacagggtcagcagctttggggaagagggacaggatgga
aacccaggagatggtttggatcttcagggacccttggctctagaggcccttagccagcag
cagcagcaggcagctaggctgggccagtggggggaggcagcaagccctttcatccaggcc
agtgttgcctttcctctgccccaacagcttgcccaccttgctcaatccaacatggctcgc
ttcccccatcagctgcttcgggcaggtaactggggccttagttccaatctggatgatgaa
gctgttccttctgcctcgaccgggccaactttcagcaggtacccaggtctcttgagagag
atggctccacaggaacagcctgagcccagggaagcagttgagatgcagcccccacctcag
tctcgcctcctccagtatcgccagtcccagccccgtggctcgggtgacccttcgtcctct
ttaggtgccatttccaaccaagctggcccttttccatcaggactctaccctcatgacaca
ggtcgggatctactgaacgaaaaccttcttaacaaccaaggtctgcagcagcacccgggg
aatcccctgtacaatactggtagctttccacatcagccaccagctcaatctgccagcccc
cctcccgcccaggtcaaataccttctgcaagaggcccagtggccccatggtggagctaca
gtgagcccaccacagcagaaccctctgatggggaatcagggccacggccttccttatgga
ctgcccatcatggctcacccgagcaggcaggagcaggttcacctgatgcagcttcaccat
cagcaccagcagcagcagcaacaacaacagcagcagcagcagcagcagcagcaacaacaa
caacaacaacaacaacaaaatcaaggtccagatcaggagtcctaccacccattatccccc
agaacatcagcagccacagcacatcacaatgtagatgagtatgaacccagaggtccaggg
cggcctctttatcagcgccgcatctcgtccacctacccagatgaatcatctccagccaac
acccacaataccctgtcacagcaatcccagccttgtgcatcagatacccaggaccaccct
catcctcacatacagcatcatcagcacccacacgccccctacagctatccttcacatgac
cacctctggccaagtaatggaggtggtccgggtccgtttcagaacattccatgtaacgga
gccggcacactcgctcagcatcgggaccttctagcttccaaggcccttcgtcaggcagag
gagcaggcaaaggcagaagccgcaggaacacagcagacgcatccacactccctcaactcc
cttcagcatcagtttcctcctctcatgcccaacaacaagcagcagcctcagcctcagcct
cagcctcccaccgagcccagcgagggggctccaaatttaggcaaacagcctaccatgtcg
tacgcgagcgcccttcgcgctccacctaagccccgggcagttcggcctgaacaggtcaag
aagaatagcgaccccctctccctcctacaagagctgagtataggaagttcaaatggtagc
aatgggtactattcctattttaaatga
DBGET
integrated database retrieval system
